Variant report
| Variant | rs2323885 |
|---|---|
| Chromosome Location | chr13:39120051-39120052 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| LINC00437 | TF binding region |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs2323937 | 0.94[ASN][1000 genomes] |
| rs4500588 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4941896 | 1.00[ASN][1000 genomes] |
| rs58095620 | 1.00[ASN][1000 genomes] |
| rs6563625 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap] |
| rs6563627 | 1.00[ASN][1000 genomes] |
| rs7331928 | 0.94[ASN][1000 genomes] |
| rs73466330 | 0.81[ASN][1000 genomes] |
| rs73466351 | 0.94[ASN][1000 genomes] |
| rs73466352 | 0.94[ASN][1000 genomes] |
| rs73466353 | 0.94[ASN][1000 genomes] |
| rs9532252 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9532255 | 0.94[ASN][1000 genomes] |
| rs9532257 | 1.00[ASN][1000 genomes] |
| rs9548394 | 1.00[ASN][1000 genomes] |
| rs9548395 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869125 | chr13:38550449-39132813 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv832584 | chr13:39074265-39284724 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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