Variant report

Variant	rs4500588
Chromosome Location	chr13:39137645-39137646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2323885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2323937	0.94[ASN][1000 genomes]
rs4941896	1.00[ASN][1000 genomes]
rs58095620	1.00[ASN][1000 genomes]
rs6563625	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6563627	1.00[ASN][1000 genomes]
rs7331928	0.94[ASN][1000 genomes]
rs73466330	0.81[ASN][1000 genomes]
rs73466351	0.94[ASN][1000 genomes]
rs73466352	0.94[ASN][1000 genomes]
rs73466353	0.94[ASN][1000 genomes]
rs9532252	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9532255	0.94[ASN][1000 genomes]
rs9532257	1.00[ASN][1000 genomes]
rs9548394	1.00[ASN][1000 genomes]
rs9548395	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39133000-39138000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:39137600-39139000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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