Variant report

Variant	rs2323909
Chromosome Location	chr13:39048881-39048882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11840889	1.00[EUR][1000 genomes]
rs4479105	1.00[EUR][1000 genomes]
rs4943589	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943591	1.00[EUR][1000 genomes]
rs7327615	1.00[EUR][1000 genomes]
rs73455906	1.00[EUR][1000 genomes]
rs7983998	1.00[EUR][1000 genomes]
rs9548362	0.84[AFR][1000 genomes]
rs9548363	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9548371	1.00[EUR][1000 genomes]
rs9576544	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1817566	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1828009	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv561513	chr13:39022191-39060049	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv561514	chr13:39033242-39064286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1800401	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1803634	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1831414	chr13:39045401-39060049	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3383588	chr13:39048822-39049296	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39046200-39061800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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