Variant report

Variant	rs4479105
Chromosome Location	chr13:39067258-39067259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11840889	1.00[EUR][1000 genomes]
rs2323909	1.00[EUR][1000 genomes]
rs4943589	1.00[EUR][1000 genomes]
rs4943591	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7327615	1.00[EUR][1000 genomes]
rs73455906	1.00[EUR][1000 genomes]
rs7983998	1.00[EUR][1000 genomes]
rs9548363	1.00[EUR][1000 genomes]
rs9548371	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1817566	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1828009	chr13:39021562-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1797776	chr13:39052556-39075865	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1812185	chr13:39057419-39069009	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1818823	chr13:39057419-39069009	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv561526	chr13:39057419-39069009	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1799520	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv1801126	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv1807030	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1820291	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv1820460	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv1829223	chr13:39057419-39081413	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv1829423	chr13:39057419-39081413	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39067200-39067600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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