Variant report
Variant | rs2327846 |
---|---|
Chromosome Location | chr20:14266455-14266456 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs11087084 | 0.90[JPT][hapmap] |
rs12329405 | 0.84[CEU][hapmap];0.90[JPT][hapmap] |
rs12624446 | 0.80[EUR][1000 genomes] |
rs1570486 | 1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs204637 | 0.81[JPT][hapmap] |
rs2145560 | 0.92[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs2208454 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2208456 | 0.90[JPT][hapmap] |
rs2327847 | 0.88[ASN][1000 genomes] |
rs3789335 | 0.85[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6033952 | 0.81[JPT][hapmap] |
rs6105236 | 0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap] |
rs6105243 | 0.90[JPT][hapmap] |
rs6105245 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6105246 | 0.81[JPT][hapmap] |
rs6105247 | 0.90[JPT][hapmap] |
rs6105250 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6110208 | 0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6110220 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs6110235 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6110241 | 0.82[AMR][1000 genomes] |
rs6110242 | 0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6110247 | 0.86[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6110251 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6110252 | 0.84[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6110255 | 0.86[CEU][hapmap];0.81[JPT][hapmap] |
rs6110259 | 0.84[CEU][hapmap];0.90[JPT][hapmap] |
rs6110263 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs6110264 | 0.86[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6131564 | 0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6135108 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6135109 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6135124 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6135125 | 0.84[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6135127 | 0.81[JPT][hapmap];0.84[AMR][1000 genomes] |
rs6135128 | 0.84[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs743216 | 0.84[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs8126410 | 0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv532514 | chr20:14097780-14288315 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1066235 | chr20:14173771-14389050 | Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv458872 | chr20:14189779-14317390 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv470540 | chr20:14189779-14317390 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv585439 | chr20:14189779-14317390 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1066105 | chr20:14201909-14272115 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | nsv1055499 | chr20:14224873-14848061 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14263400-14268200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
2 | chr20:14265400-14267600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
3 | chr20:14265600-14267600 | Weak transcription | HMEC | breast |
4 | chr20:14265600-14267800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
5 | chr20:14265800-14267400 | Weak transcription | NHEK | skin |
6 | chr20:14266000-14267600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |