Variant report
Variant | rs6105243 |
---|---|
Chromosome Location | chr20:14281082-14281083 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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rs_ID | r2[population] |
---|---|
rs11087084 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12329405 | 0.84[JPT][hapmap] |
rs1570486 | 0.82[CHB][hapmap] |
rs204629 | 0.87[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs204636 | 0.80[CEU][hapmap];0.84[CHB][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap] |
rs204637 | 0.82[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap] |
rs204645 | 0.80[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2208454 | 0.82[CHB][hapmap];0.92[JPT][hapmap] |
rs2208456 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap] |
rs2327846 | 0.90[JPT][hapmap] |
rs2327847 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs3789335 | 0.84[JPT][hapmap] |
rs6033952 | 0.82[CHB][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6042672 | 0.88[CHB][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs6042695 | 0.80[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap] |
rs6105236 | 0.87[CHB][hapmap];0.92[JPT][hapmap] |
rs6105245 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes] |
rs6105246 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6105247 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6110220 | 0.87[CHB][hapmap];0.92[JPT][hapmap] |
rs6110235 | 0.94[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6110242 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6110247 | 0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes] |
rs6110252 | 0.84[JPT][hapmap] |
rs6110255 | 0.84[JPT][hapmap] |
rs6110259 | 0.84[JPT][hapmap] |
rs6110264 | 0.84[JPT][hapmap] |
rs6135109 | 0.92[JPT][hapmap] |
rs6135125 | 0.84[JPT][hapmap] |
rs6135128 | 0.84[JPT][hapmap] |
rs743216 | 0.84[JPT][hapmap] |
rs8126410 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066810 | chr20:13451869-14432454 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv531479 | chr20:13632491-14434432 | Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1057486 | chr20:14077828-14469129 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv532514 | chr20:14097780-14288315 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1066235 | chr20:14173771-14389050 | Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv458872 | chr20:14189779-14317390 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv470540 | chr20:14189779-14317390 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv585439 | chr20:14189779-14317390 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1055499 | chr20:14224873-14848061 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |