Variant report

Variant	rs2328600
Chromosome Location	chr6:145032472-145032473
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13199226	0.89[AMR][1000 genomes]
rs1406045	0.92[AMR][1000 genomes]
rs1534439	0.92[AMR][1000 genomes]
rs2328598	0.93[AMR][1000 genomes]
rs4895649	0.92[AMR][1000 genomes]
rs6570641	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6924941	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6927255	0.96[AMR][1000 genomes]
rs7758449	0.85[AMR][1000 genomes]
rs9373423	0.86[AMR][1000 genomes]
rs9376843	0.96[AMR][1000 genomes]
rs9390189	0.88[AMR][1000 genomes]
rs9390200	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9484899	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
3	chr6:145009000-145047000	Weak transcription	Esophagus	oesophagus
4	chr6:145010600-145047000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:145011000-145052600	Weak transcription	Ovary	ovary
6	chr6:145011200-145035200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:145011800-145065600	Weak transcription	Pancreas	Pancrea
8	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
10	chr6:145012000-145036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:145012000-145039200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:145012000-145047000	Weak transcription	Gastric	stomach
13	chr6:145012000-145055600	Weak transcription	Spleen	Spleen
14	chr6:145012400-145053000	Weak transcription	Fetal Stomach	stomach
15	chr6:145014200-145033600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:145014200-145047000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:145018200-145047200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:145018200-145052400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:145018400-145069000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:145018800-145033400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:145018800-145041200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:145019000-145047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:145019400-145036600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:145019400-145052600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:145020200-145035400	Weak transcription	Fetal Lung	lung
26	chr6:145020800-145039400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:145021800-145032800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:145022000-145041000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:145022000-145051400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:145022200-145053000	Weak transcription	Fetal Intestine Small	intestine
31	chr6:145022800-145036600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:145023800-145033200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:145024000-145039000	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:145024000-145087200	Weak transcription	Psoas Muscle	Psoas
35	chr6:145024200-145047000	Weak transcription	Fetal Thymus	thymus
36	chr6:145024600-145051400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:145024800-145039000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:145025000-145047200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:145025000-145050200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:145025400-145035800	Weak transcription	Fetal Kidney	kidney
41	chr6:145026800-145033000	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:145026800-145038200	Weak transcription	Adipose Nuclei	Adipose
43	chr6:145026800-145039800	Weak transcription	Left Ventricle	heart
44	chr6:145027400-145052400	Weak transcription	Liver	Liver
45	chr6:145029800-145034200	Enhancers	HMEC	breast
46	chr6:145030000-145041400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:145030000-145047000	Weak transcription	Lung	lung
48	chr6:145030000-145047000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:145030200-145032800	Weak transcription	Primary T cells from cord blood	blood
50	chr6:145030200-145033600	Weak transcription	HepG2	liver

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