Variant report

Variant	rs4895649
Chromosome Location	chr6:145009422-145009423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13199226	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213354	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1406045	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534439	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590054	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2328598	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2328600	0.92[AMR][1000 genomes]
rs4896736	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570640	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570641	0.92[AMR][1000 genomes]
rs6924941	0.85[AMR][1000 genomes]
rs6927255	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740417	0.84[EUR][1000 genomes]
rs7758449	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765963	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7765968	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373423	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9376842	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376843	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390189	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390197	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390200	0.88[AMR][1000 genomes]
rs9403587	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484899	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
2	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
3	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
4	chr6:144996000-145010000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:144996600-145018400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:144996800-145009800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:144997000-145010000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:144997000-145010000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:144997000-145010000	Weak transcription	Spleen	Spleen
11	chr6:144997000-145010200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:144997000-145010200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:144997000-145010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:144997000-145010600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:144997000-145011000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:144997000-145011400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:144997000-145011800	Weak transcription	Colonic Mucosa	Colon
18	chr6:144997000-145017600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:144997200-145018000	Weak transcription	NHLF	lung
20	chr6:144999400-145013200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:144999400-145025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:144999800-145010200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:145000800-145025400	Weak transcription	HSMM	muscle
24	chr6:145002400-145010800	Weak transcription	Right Atrium	heart
25	chr6:145002400-145013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:145002800-145009800	Weak transcription	Aorta	Aorta
27	chr6:145002800-145018000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
29	chr6:145004600-145010000	Weak transcription	Ovary	ovary
30	chr6:145004600-145010200	Weak transcription	Gastric	stomach
31	chr6:145004600-145010400	Weak transcription	Lung	lung
32	chr6:145004600-145010400	Weak transcription	Thymus	Thymus
33	chr6:145004600-145010600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:145005000-145009800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:145005000-145010000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:145005000-145010000	Weak transcription	Pancreas	Pancrea
37	chr6:145005000-145010200	Weak transcription	Left Ventricle	heart
38	chr6:145005000-145010400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:145005000-145017800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:145005000-145031000	Weak transcription	HUVEC	blood vessel
41	chr6:145005200-145010600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:145005200-145010600	Weak transcription	Fetal Thymus	thymus
43	chr6:145005800-145010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:145005800-145010200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:145005800-145010200	Weak transcription	HepG2	liver
46	chr6:145005800-145017400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:145007400-145010400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr6:145008200-145011600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:145008400-145010000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:145008400-145010000	Weak transcription	Dnd41	blood

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