Variant report

Variant	rs2328791
Chromosome Location	chr6:23736848-23736849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11753829	0.88[EUR][1000 genomes]
rs12661929	0.85[EUR][1000 genomes]
rs12664827	0.84[EUR][1000 genomes]
rs1325015	0.91[EUR][1000 genomes]
rs1325016	0.92[EUR][1000 genomes]
rs1325026	0.87[EUR][1000 genomes]
rs1325027	0.87[EUR][1000 genomes]
rs1325028	0.86[EUR][1000 genomes]
rs1925200	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2147702	0.88[EUR][1000 genomes]
rs2182074	0.88[EUR][1000 genomes]
rs2328792	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328793	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328795	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328796	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4530849	0.91[EUR][1000 genomes]
rs62399822	0.96[EUR][1000 genomes]
rs62399833	0.87[EUR][1000 genomes]
rs62399834	0.87[EUR][1000 genomes]
rs62399835	0.87[EUR][1000 genomes]
rs62401894	0.90[EUR][1000 genomes]
rs72835541	0.98[EUR][1000 genomes]
rs9295598	0.88[EUR][1000 genomes]
rs9356892	0.90[EUR][1000 genomes]
rs9356893	0.90[EUR][1000 genomes]
rs9356894	0.90[EUR][1000 genomes]
rs9356898	0.88[EUR][1000 genomes]
rs9358692	0.87[EUR][1000 genomes]
rs9358693	0.86[EUR][1000 genomes]
rs9358695	0.87[EUR][1000 genomes]
rs9358696	0.87[EUR][1000 genomes]
rs9358697	0.87[EUR][1000 genomes]
rs9366532	0.90[EUR][1000 genomes]
rs9379581	0.88[EUR][1000 genomes]
rs9379583	0.87[EUR][1000 genomes]
rs9379584	0.84[EUR][1000 genomes]
rs9379585	0.87[EUR][1000 genomes]
rs9393473	0.86[EUR][1000 genomes]
rs9393475	0.87[EUR][1000 genomes]
rs9393476	0.86[EUR][1000 genomes]
rs942659	0.88[EUR][1000 genomes]
rs942660	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv14730	chr6:23711548-23746486	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23736600-23737600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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