Variant report

Variant	rs62399822
Chromosome Location	chr6:23729113-23729114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:23727349..23729834-chr6:23731098..23732910,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11753829	0.86[EUR][1000 genomes]
rs12661929	0.84[EUR][1000 genomes]
rs12664827	0.82[EUR][1000 genomes]
rs1325015	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1325016	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1325026	0.84[EUR][1000 genomes]
rs1325027	0.84[EUR][1000 genomes]
rs1325028	0.85[EUR][1000 genomes]
rs1925200	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2147702	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2182074	0.86[EUR][1000 genomes]
rs2328791	0.96[EUR][1000 genomes]
rs2328792	0.96[EUR][1000 genomes]
rs2328793	0.96[EUR][1000 genomes]
rs2328795	0.96[EUR][1000 genomes]
rs2328796	0.96[EUR][1000 genomes]
rs4530849	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62399817	0.83[ASN][1000 genomes]
rs62399833	0.84[EUR][1000 genomes]
rs62399834	0.84[EUR][1000 genomes]
rs62399835	0.84[EUR][1000 genomes]
rs62401894	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72835541	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295598	0.86[EUR][1000 genomes]
rs9356892	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9356893	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9356894	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9356898	0.85[EUR][1000 genomes]
rs9358692	0.85[EUR][1000 genomes]
rs9358693	0.84[EUR][1000 genomes]
rs9358695	0.84[EUR][1000 genomes]
rs9358696	0.84[EUR][1000 genomes]
rs9358697	0.84[EUR][1000 genomes]
rs9366532	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9379581	0.85[EUR][1000 genomes]
rs9379583	0.85[EUR][1000 genomes]
rs9379584	0.81[EUR][1000 genomes]
rs9379585	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9393473	0.83[EUR][1000 genomes]
rs9393475	0.84[EUR][1000 genomes]
rs9393476	0.83[EUR][1000 genomes]
rs942659	0.86[EUR][1000 genomes]
rs942660	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv14730	chr6:23711548-23746486	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23726800-23730000	Weak transcription	Stomach Mucosa	stomach
2	chr6:23728200-23730800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:23728800-23729200	Enhancers	Fetal Intestine Large	intestine
4	chr6:23728800-23729200	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:23728800-23729400	Enhancers	Fetal Lung	lung
6	chr6:23728800-23730600	Enhancers	Fetal Heart	heart
7	chr6:23729000-23729400	Enhancers	Pancreatic Islets	Pancreatic Islet

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