Variant report

Variant	rs62399817
Chromosome Location	chr6:23706054-23706055
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12174310	0.91[EUR][1000 genomes]
rs13204659	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1324676	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17213333	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1886565	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2181941	0.83[EUR][1000 genomes]
rs35713964	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35929784	0.91[EUR][1000 genomes]
rs55762814	0.83[EUR][1000 genomes]
rs55775216	0.83[EUR][1000 genomes]
rs62399822	0.83[ASN][1000 genomes]
rs6415099	0.83[EUR][1000 genomes]
rs7751947	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7757040	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9356872	0.87[EUR][1000 genomes]
rs9358652	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv462656	chr6:23629281-23721032	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv601125	chr6:23629281-23721032	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23704400-23706200	Enhancers	Fetal Muscle Leg	muscle
2	chr6:23704400-23706600	Enhancers	Rectal Smooth Muscle	rectum
3	chr6:23705800-23706400	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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