Variant report

Variant	rs232893
Chromosome Location	chr1:59109669-59109670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2811891	1.00[AMR][1000 genomes]
rs556801	1.00[AMR][1000 genomes]
rs613810	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59093200-59115400	Weak transcription	NHEK	skin
2	chr1:59096000-59121600	Weak transcription	HUVEC	blood vessel
3	chr1:59096600-59121600	Weak transcription	Gastric	stomach
4	chr1:59102000-59130400	Weak transcription	Aorta	Aorta
5	chr1:59103600-59115200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:59104600-59115600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:59104600-59115600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:59107200-59110200	Weak transcription	Primary T cells from cord blood	blood
9	chr1:59108000-59115600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:59108200-59130400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:59108400-59115600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:59108600-59121600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:59108800-59114400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:59109000-59121600	Weak transcription	HepG2	liver
15	chr1:59109400-59110800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:59109400-59121600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr1:59109600-59117800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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