Variant report

Variant	rs2329353
Chromosome Location	chr5:40748268-40748269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:40748130..40750618-chr5:40832947..40835758,2	K562	blood:
2	chr5:40745635..40751387-chr5:40751429..40754891,8	K562	blood:
3	chr5:40746153..40748506-chr5:40750169..40752840,2	K562	blood:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1002423	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1002424	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10071679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10074991	0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13361707	0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1345778	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs28544962	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805487	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805495	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957352	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58692207	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58751240	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59133000	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59338019	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59585832	1.00[ASN][1000 genomes]
rs6868517	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7702883	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7705504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2329353	FGF10	cis	cerebellum	SCAN
rs2329353	RPL37	cis	cerebellum	SCAN

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40722800-40755200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:40736000-40755200	Weak transcription	Pancreas	Pancrea
3	chr5:40736200-40754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:40736400-40753800	Weak transcription	Fetal Heart	heart
5	chr5:40736400-40754200	Weak transcription	Gastric	stomach
6	chr5:40736400-40754200	Weak transcription	NHLF	lung
7	chr5:40736600-40754200	Weak transcription	Osteobl	bone
8	chr5:40738000-40754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:40739400-40754200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:40739800-40754200	Weak transcription	NHEK	skin
11	chr5:40740800-40754200	Weak transcription	HSMMtube	muscle
12	chr5:40741000-40754200	Weak transcription	Colonic Mucosa	Colon
13	chr5:40741600-40754200	Weak transcription	K562	blood
14	chr5:40741800-40751200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:40741800-40752000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr5:40741800-40753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr5:40741800-40754000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:40741800-40754200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:40741800-40754200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:40741800-40754200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:40741800-40754200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:40741800-40754200	Weak transcription	Fetal Brain Male	brain
23	chr5:40741800-40754200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:40741800-40754200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:40741800-40754200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:40741800-40754200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr5:40741800-40754200	Weak transcription	NH-A	brain
28	chr5:40741800-40754400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:40741800-40754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:40741800-40754400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:40742000-40748400	Weak transcription	Brain Germinal Matrix	brain
32	chr5:40742000-40751400	Weak transcription	Fetal Brain Female	brain
33	chr5:40742000-40752400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr5:40742000-40752400	Weak transcription	Thymus	Thymus
35	chr5:40742000-40753600	Weak transcription	GM12878-XiMat	blood
36	chr5:40742000-40754200	Weak transcription	Primary T cells from cord blood	blood
37	chr5:40742000-40754200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:40742000-40754200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:40742000-40754200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr5:40742000-40754200	Weak transcription	Lung	lung
41	chr5:40742000-40754200	Weak transcription	Ovary	ovary
42	chr5:40742000-40754400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr5:40742000-40754800	Weak transcription	Aorta	Aorta
44	chr5:40742000-40755200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr5:40742000-40755200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr5:40742000-40755400	Weak transcription	Spleen	Spleen
47	chr5:40742200-40753600	Weak transcription	HepG2	liver
48	chr5:40742200-40754000	Weak transcription	Liver	Liver
49	chr5:40742200-40754200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:40742200-40754200	Weak transcription	Fetal Intestine Small	intestine

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