Variant report

Variant	rs7705504
Chromosome Location	chr5:40739261-40739262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:40738727..40741044-chr5:40742563..40745555,2	K562	blood:
2	chr5:40739022..40741239-chr5:40755356..40757142,2	K562	blood:
3	chr5:40739126..40740645-chr5:40833816..40835461,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction
ENSG00000113638	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1002423	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1002424	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10071679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10074991	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13361707	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1345778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2329353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28544962	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805487	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805495	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3805497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4957352	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58692207	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58751240	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59133000	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59338019	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59585832	0.99[ASN][1000 genomes]
rs6868517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7702883	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40692400-40741200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:40709600-40745000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:40712800-40741200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:40713200-40740600	Weak transcription	Right Ventricle	heart
5	chr5:40714600-40739400	Weak transcription	GM12878-XiMat	blood
6	chr5:40715400-40739400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:40721200-40739600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:40721400-40739600	Weak transcription	Placenta	Placenta
9	chr5:40721400-40741400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:40721800-40740600	Weak transcription	Fetal Brain Male	brain
11	chr5:40722200-40739400	Weak transcription	Primary B cells from cord blood	blood
12	chr5:40722800-40741400	Weak transcription	Aorta	Aorta
13	chr5:40722800-40755200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:40723000-40741600	Weak transcription	Lung	lung
15	chr5:40724200-40740600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr5:40724600-40740800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr5:40724800-40740600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:40728200-40745600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:40728400-40739400	Weak transcription	Left Ventricle	heart
20	chr5:40728600-40739400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:40728600-40739400	Weak transcription	Thymus	Thymus
22	chr5:40728600-40740400	Weak transcription	Fetal Thymus	thymus
23	chr5:40728600-40741200	Weak transcription	Fetal Stomach	stomach
24	chr5:40728800-40741200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:40729000-40741400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:40729200-40739400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:40729200-40741400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:40730400-40739600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr5:40734000-40739400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:40734000-40739600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:40734000-40739600	Weak transcription	Fetal Muscle Leg	muscle
32	chr5:40734200-40740800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr5:40734200-40741600	Weak transcription	Psoas Muscle	Psoas
34	chr5:40734400-40739600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr5:40734400-40739600	Weak transcription	HSMMtube	muscle
36	chr5:40734400-40740600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr5:40734400-40741400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:40734800-40740600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr5:40735000-40740400	Weak transcription	Colonic Mucosa	Colon
40	chr5:40735000-40741400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr5:40735200-40739600	Weak transcription	Esophagus	oesophagus
42	chr5:40735200-40740200	Weak transcription	Fetal Kidney	kidney
43	chr5:40735400-40740600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr5:40735400-40740800	Weak transcription	Adipose Nuclei	Adipose
45	chr5:40735400-40741400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr5:40736000-40740200	Weak transcription	Hela-S3	cervix
47	chr5:40736000-40740600	Weak transcription	Ovary	ovary
48	chr5:40736000-40740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr5:40736000-40740600	Weak transcription	Spleen	Spleen
50	chr5:40736000-40741600	Weak transcription	HepG2	liver

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