Variant report
| Variant | rs2329407 |
|---|---|
| Chromosome Location | chr7:39564052-39564053 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17687693 | 0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2329401 | 0.81[ASN][1000 genomes] |
| rs2329402 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2329404 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2329405 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2329408 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2876843 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2876855 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4599720 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4720325 | 0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4723874 | 0.80[ASN][1000 genomes] |
| rs4723875 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6462926 | 0.95[ASN][1000 genomes] |
| rs6462928 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6967653 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6968234 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs734460 | 0.81[ASN][1000 genomes] |
| rs7784744 | 0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7805163 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9639813 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9770075 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021180 | chr7:39424988-39642261 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026951 | chr7:39429036-39642261 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv966782 | chr7:39454992-39581886 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1018430 | chr7:39455497-39643569 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:39560800-39566400 | Weak transcription | Fetal Intestine Large | intestine |
