Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17687693	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329401	0.83[ASN][1000 genomes]
rs2329402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329404	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2329405	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329407	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329408	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2876843	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2876855	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4599720	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4723874	0.82[ASN][1000 genomes]
rs4723875	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6462926	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6462928	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6967653	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6968234	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs734460	0.83[ASN][1000 genomes]
rs7784744	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805163	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9639813	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9770075	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39555800-39559200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:39556000-39558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:39557000-39559200	Weak transcription	Dnd41	blood

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