Variant report

Variant	rs2329877
Chromosome Location	chr7:40816465-40816466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1006376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10233069	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10235458	0.82[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs10268219	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10276629	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10279715	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs1029620	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1029621	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10951639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1203569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1203570	0.81[CEU][hapmap]
rs1203573	0.96[CEU][hapmap];0.83[CHB][hapmap]
rs12701836	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12701837	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13243593	0.87[ASN][1000 genomes]
rs13246232	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs1733483	0.88[CEU][hapmap]
rs17770991	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1974547	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2108375	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2108376	0.89[ASN][1000 genomes]
rs2302025	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs34689844	0.89[ASN][1000 genomes]
rs35628600	0.88[EUR][1000 genomes]
rs35995194	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36200804	0.85[EUR][1000 genomes]
rs6462989	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs723838	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763714	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830973	chr7:40816419-40851594	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2329877	INHBA	cis	Nerve Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40812000-40817200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:40812400-40820000	Weak transcription	Aorta	Aorta

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