Variant report

Variant	rs35995194
Chromosome Location	chr7:40853503-40853504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1006376	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10233069	0.94[ASN][1000 genomes]
rs10235458	0.85[ASN][1000 genomes]
rs10268219	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10272516	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10279715	0.91[ASN][1000 genomes]
rs1029620	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1029621	0.84[ASN][1000 genomes]
rs10951639	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1203569	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1203570	0.80[EUR][1000 genomes]
rs1203573	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1203575	0.80[EUR][1000 genomes]
rs12701836	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12701837	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs13243593	0.93[ASN][1000 genomes]
rs13246232	0.87[ASN][1000 genomes]
rs1733483	0.81[EUR][1000 genomes]
rs17770991	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1974547	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2108375	0.94[ASN][1000 genomes]
rs2108376	0.94[ASN][1000 genomes]
rs2302025	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2329877	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34689844	0.94[ASN][1000 genomes]
rs35628600	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs36200804	0.96[EUR][1000 genomes]
rs6462989	0.87[ASN][1000 genomes]
rs723838	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763714	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35995194	INHBA	cis	Nerve Tibial	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40848800-40854200	Weak transcription	HMEC	breast
2	chr7:40849800-40854600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:40849800-40854800	Weak transcription	Osteobl	bone
4	chr7:40850000-40854600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:40850600-40854800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:40851800-40854400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:40851800-40854600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links