Variant report

Variant	rs2332656
Chromosome Location	chr4:174118670-174118671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174118592..174121247-chr4:174121790..174123331,2	K562	blood:
2	chr4:174117968..174119559-chr4:174121744..174124525,2	MCF-7	breast:
3	chr4:174089089..174091226-chr4:174116772..174119184,3	MCF-7	breast:
4	chr4:174117685..174120092-chr4:174121042..174123290,2	K562	blood:

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10009959	0.87[ASN][1000 genomes]
rs17059207	1.00[ASN][1000 genomes]
rs2332651	0.81[ASN][1000 genomes]
rs2332652	0.84[ASN][1000 genomes]
rs28361970	0.87[ASN][1000 genomes]
rs28694391	0.87[ASN][1000 genomes]
rs2877749	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4608791	0.87[ASN][1000 genomes]
rs4696053	0.89[AMR][1000 genomes]
rs6553684	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6553686	0.87[ASN][1000 genomes]
rs7670064	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7673747	1.00[ASN][1000 genomes]
rs7694420	0.87[ASN][1000 genomes]
rs9684166	0.87[ASN][1000 genomes]
rs9685410	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174104000-174157200	Weak transcription	Ovary	ovary
2	chr4:174107400-174120800	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:174108800-174126800	Weak transcription	Spleen	Spleen
4	chr4:174110200-174118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:174112600-174131200	Weak transcription	Colonic Mucosa	Colon
6	chr4:174112800-174122800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:174112800-174126200	Weak transcription	Pancreas	Pancrea
8	chr4:174112800-174126400	Weak transcription	Gastric	stomach
9	chr4:174112800-174127000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:174112800-174140000	Weak transcription	Aorta	Aorta
11	chr4:174113000-174120400	Weak transcription	HSMMtube	muscle
12	chr4:174113400-174132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:174113800-174126200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:174113800-174138000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:174114000-174123600	Weak transcription	Fetal Intestine Large	intestine
16	chr4:174114000-174125400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:174114000-174130800	Weak transcription	Brain Substantia Nigra	brain
18	chr4:174114200-174120400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:174114200-174120400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:174114200-174123200	Weak transcription	Fetal Intestine Small	intestine
21	chr4:174114200-174125200	Weak transcription	Small Intestine	intestine
22	chr4:174114200-174125600	Weak transcription	A549	lung
23	chr4:174114200-174125800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:174114200-174126200	Weak transcription	Esophagus	oesophagus
25	chr4:174114200-174127000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:174114400-174124200	Weak transcription	Fetal Thymus	thymus
28	chr4:174114400-174125200	Weak transcription	Primary T cells from cord blood	blood
29	chr4:174114600-174155000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:174115200-174127200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:174116600-174118800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:174116600-174120200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:174116800-174120000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr4:174116800-174120200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr4:174116800-174120200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr4:174116800-174126200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:174116800-174126400	Weak transcription	HSMM	muscle
38	chr4:174116800-174135200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:174117000-174120200	Weak transcription	Brain Anterior Caudate	brain
40	chr4:174117000-174122800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr4:174117000-174123400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:174117000-174123400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:174117000-174123400	Weak transcription	K562	blood
44	chr4:174117000-174124600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr4:174117000-174126000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr4:174117000-174127800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr4:174117000-174130800	Weak transcription	Brain Angular Gyrus	brain
48	chr4:174117200-174122400	Weak transcription	Primary B cells from cord blood	blood
49	chr4:174117200-174125200	Weak transcription	Dnd41	blood
50	chr4:174117600-174126000	Weak transcription	Thymus	Thymus

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