Variant report

Variant	rs9684166
Chromosome Location	chr4:174157211-174157212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174155629..174158064-chr4:174160464..174162716,2	K562	blood:
2	chr4:174155629..174158011-chr4:174160464..174162573,2	K562	blood:
3	chr4:174133009..174135826-chr4:174157203..174158877,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10009959	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17059207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2332656	0.87[ASN][1000 genomes]
rs28361970	1.00[ASN][1000 genomes]
rs28694391	1.00[ASN][1000 genomes]
rs2877749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4608791	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4639046	0.85[JPT][hapmap]
rs4696053	0.91[ASN][1000 genomes]
rs6553684	1.00[ASN][1000 genomes]
rs6553686	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7670064	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7673747	0.87[ASN][1000 genomes]
rs7694420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9685410	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9993327	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174123600-174174200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:174126600-174163400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:174127000-174163600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:174127000-174163600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:174128200-174169200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:174131800-174168600	Weak transcription	Gastric	stomach
8	chr4:174136600-174158400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:174139000-174157600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:174140400-174158200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:174140400-174163400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:174140400-174163600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:174140400-174163600	Weak transcription	Aorta	Aorta
14	chr4:174140600-174158000	Weak transcription	Hela-S3	cervix
15	chr4:174140600-174158200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:174140600-174158600	Weak transcription	HSMMtube	muscle
17	chr4:174142200-174173400	Weak transcription	Lung	lung
18	chr4:174144200-174169000	Weak transcription	Fetal Intestine Large	intestine
19	chr4:174145800-174163800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:174145800-174163800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr4:174148000-174157400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:174148000-174173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:174150200-174163800	Weak transcription	Psoas Muscle	Psoas
24	chr4:174150200-174173400	Weak transcription	Small Intestine	intestine
25	chr4:174150400-174157800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:174151200-174158200	Weak transcription	A549	lung
27	chr4:174151200-174163200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr4:174151400-174163000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:174151400-174171000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:174152600-174160600	Weak transcription	Fetal Brain Male	brain
31	chr4:174152600-174173400	Weak transcription	Left Ventricle	heart
32	chr4:174152800-174158200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr4:174153000-174169200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr4:174153600-174171000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr4:174153800-174162800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:174154000-174157600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:174154200-174157600	Weak transcription	Colonic Mucosa	Colon
38	chr4:174154400-174163200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:174154800-174159200	Enhancers	Fetal Lung	lung
40	chr4:174155200-174158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:174155400-174158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:174155400-174158400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr4:174155800-174158600	Genic enhancers	Fetal Thymus	thymus
44	chr4:174155800-174164000	Weak transcription	NHLF	lung
45	chr4:174156000-174163600	Enhancers	Dnd41	blood
46	chr4:174156200-174157600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr4:174156200-174163800	Weak transcription	GM12878-XiMat	blood
48	chr4:174156600-174157400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr4:174156600-174157400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr4:174156600-174157600	Weak transcription	Brain Angular Gyrus	brain

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