Variant report
Variant | rs2336596 |
---|---|
Chromosome Location | chr1:196995092-196995093 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10484502 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10737685 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10754209 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10754216 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs10801575 | 0.92[CHD][hapmap];0.81[JPT][hapmap] |
rs10801589 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10922163 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1127661 | 0.88[CHD][hapmap];0.82[JPT][hapmap] |
rs11589158 | 0.83[ASN][1000 genomes] |
rs1170879 | 0.88[ASN][1000 genomes] |
rs12723250 | 0.82[ASN][1000 genomes] |
rs12755054 | 1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
rs1332661 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1332667 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1412635 | 0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1611982 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1615413 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1750311 | 1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs17514309 | 0.83[ASN][1000 genomes] |
rs17514324 | 0.84[ASN][1000 genomes] |
rs17549312 | 0.81[ASN][1000 genomes] |
rs17549360 | 0.84[ASN][1000 genomes] |
rs17549430 | 0.84[ASN][1000 genomes] |
rs1759013 | 0.86[YRI][hapmap] |
rs1759016 | 0.93[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes] |
rs17662710 | 0.89[ASN][1000 genomes] |
rs1794003 | 0.86[YRI][hapmap] |
rs1794011 | 0.81[ASN][1000 genomes] |
rs2225565 | 0.91[ASN][1000 genomes] |
rs2298882 | 0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2878749 | 0.89[CHD][hapmap];0.82[JPT][hapmap] |
rs3737111 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs3748555 | 0.82[ASN][1000 genomes] |
rs3748556 | 0.82[ASN][1000 genomes] |
rs3748557 | 0.85[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
rs4244139 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs45445493 | 0.89[ASN][1000 genomes] |
rs45489701 | 0.82[ASN][1000 genomes] |
rs5990 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs5996 | 0.83[ASN][1000 genomes] |
rs5998 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs60002789 | 0.82[ASN][1000 genomes] |
rs61820789 | 0.91[ASN][1000 genomes] |
rs61820800 | 0.89[ASN][1000 genomes] |
rs66511405 | 0.81[ASN][1000 genomes] |
rs6677930 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs6700180 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6702252 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs698859 | 0.81[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs72468006 | 0.82[ASN][1000 genomes] |
rs7410943 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs7514071 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7517428 | 0.84[ASN][1000 genomes] |
rs7518773 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7525490 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7535993 | 0.98[ASN][1000 genomes] |
rs857018 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs857023 | 0.82[AFR][1000 genomes] |
rs857024 | 0.89[ASN][1000 genomes] |
rs857025 | 0.84[ASN][1000 genomes] |
rs9427652 | 0.82[ASN][1000 genomes] |
rs9427664 | 0.95[ASN][1000 genomes] |
rs9427934 | 0.82[ASN][1000 genomes] |
rs9727516 | 0.82[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv528460 | chr1:196542567-197446702 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
2 | esv2758990 | chr1:196590837-197169772 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
3 | nsv427897 | chr1:196590837-197169772 | Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
4 | esv2756880 | chr1:196709223-197066074 | ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
5 | esv34978 | chr1:196733133-197011577 | Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
6 | nsv430158 | chr1:196733133-197011577 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
7 | nsv430180 | chr1:196739837-197007479 | Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
8 | nsv1003573 | chr1:196825211-197005106 | Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | esv2757767 | chr1:196977799-197169772 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:196994800-196995200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |