Variant report

Variant	rs2337032
Chromosome Location	chr5:167391882-167391883
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13171977	0.81[ASN][1000 genomes]
rs1422932	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2337033	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6865920	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs7709317	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167379400-167394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:167380600-167394800	Weak transcription	HSMM	muscle
3	chr5:167380800-167394200	Weak transcription	NHEK	skin
4	chr5:167381000-167393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167385800-167407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:167387800-167400600	Weak transcription	Right Atrium	heart
7	chr5:167388000-167396800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:167388200-167394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:167388200-167395000	Weak transcription	Left Ventricle	heart
10	chr5:167388200-167407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:167389200-167393200	Weak transcription	Right Ventricle	heart
12	chr5:167389200-167394000	Weak transcription	Fetal Lung	lung
13	chr5:167390200-167392800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:167391200-167392000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:167391200-167392400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:167391600-167393600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:167391800-167393400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:167391800-167393400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:167391800-167394200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:167391800-167394800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:167391800-167394800	Weak transcription	NH-A	brain

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