Variant report

Variant	rs6865920
Chromosome Location	chr5:167389006-167389007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2337032	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2337033	0.85[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167379400-167394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:167380600-167394800	Weak transcription	HSMM	muscle
3	chr5:167380800-167394200	Weak transcription	NHEK	skin
4	chr5:167381000-167393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167385000-167390200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167385800-167407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:167387800-167400600	Weak transcription	Right Atrium	heart
8	chr5:167388000-167396800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:167388200-167394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:167388200-167395000	Weak transcription	Left Ventricle	heart
11	chr5:167388200-167407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:167388400-167391800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:167388600-167389200	Enhancers	Right Ventricle	heart
14	chr5:167389000-167389200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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