Variant report

Variant	rs2339291
Chromosome Location	chr8:91940255-91940256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91933857..91937511-chr8:91939671..91942418,3	MCF-7	breast:
2	chr8:91874171..91876388-chr8:91938956..91941068,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1002583	0.83[AMR][1000 genomes]
rs1003996	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10108486	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10112439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1011254	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12675931	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13265644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13276591	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1386111	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1386112	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1486465	0.94[CEU][hapmap]
rs1542666	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16905571	0.83[CEU][hapmap]
rs2054805	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2129261	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2255173	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2339289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2631012	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2631014	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2631017	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631024	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2631027	0.81[ASN][1000 genomes]
rs2631030	0.87[ASN][1000 genomes]
rs2631033	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677573	1.00[CEU][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677580	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2740776	0.89[EUR][1000 genomes]
rs2740782	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2740795	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2740799	0.94[CEU][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4448231	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4634599	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7005565	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7018395	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818155	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7825360	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7828122	0.89[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv891185	chr8:91923776-92056288	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91916400-91953000	Weak transcription	Aorta	Aorta
2	chr8:91926400-91948800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:91926600-91948400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:91926800-91948400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:91929400-91948200	Weak transcription	Brain Anterior Caudate	brain
6	chr8:91929800-91948000	Weak transcription	Brain Angular Gyrus	brain
7	chr8:91933600-91943200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:91934800-91952200	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:91935200-91948400	Weak transcription	Fetal Brain Male	brain
10	chr8:91935800-91947600	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:91939000-91948600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:91939400-91941200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr8:91939800-91940400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:91939800-91940600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
15	chr8:91939800-91941000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr8:91940000-91940400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr8:91940000-91940600	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr8:91940200-91940400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr8:91940200-91940400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr8:91940200-91940600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:91940200-91940800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
22	chr8:91940200-91940800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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