Variant report

Variant	rs2740782
Chromosome Location	chr8:91964733-91964734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91961850..91965214-chr8:91972320..91975888,3	K562	blood:
2	chr8:91963528..91965609-chr8:91967085..91969993,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1003996	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10108486	0.90[ASN][1000 genomes]
rs10112439	0.88[ASN][1000 genomes]
rs1011254	0.81[ASN][1000 genomes]
rs12675931	0.82[ASN][1000 genomes]
rs13265644	0.88[ASN][1000 genomes]
rs1386111	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1386112	0.81[ASN][1000 genomes]
rs1542666	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2129261	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255173	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2339289	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2339291	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2631012	0.81[ASN][1000 genomes]
rs2631014	0.81[ASN][1000 genomes]
rs2631017	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631024	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2631027	0.86[ASN][1000 genomes]
rs2631030	0.83[ASN][1000 genomes]
rs2631033	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2677573	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677580	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2740795	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2740799	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4448231	0.90[ASN][1000 genomes]
rs4634599	0.90[ASN][1000 genomes]
rs7005565	0.90[ASN][1000 genomes]
rs7018395	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7825360	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv891185	chr8:91923776-92056288	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91951800-91986400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:91953200-91967000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91953400-91967000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:91953400-91972000	Weak transcription	NHDF-Ad	bronchial
5	chr8:91953400-91981400	Weak transcription	HSMM	muscle
6	chr8:91953400-91984600	Weak transcription	NH-A	brain
7	chr8:91953600-91965800	Weak transcription	NHLF	lung
8	chr8:91953600-91966600	Weak transcription	Right Ventricle	heart
9	chr8:91953600-91970000	Weak transcription	Brain Anterior Caudate	brain
10	chr8:91953600-91974800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:91953600-91976000	Weak transcription	Brain Substantia Nigra	brain
12	chr8:91953600-91977600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:91954000-91970600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:91954000-91974400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:91955000-91974800	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:91955600-91972000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:91955600-91975000	Weak transcription	Adipose Nuclei	Adipose
18	chr8:91955800-91972000	Weak transcription	Fetal Lung	lung
19	chr8:91956400-91968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:91956600-91974400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:91957200-91976200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:91957400-91974400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr8:91958000-91976200	Weak transcription	K562	blood
24	chr8:91958200-91996000	Weak transcription	Fetal Stomach	stomach
25	chr8:91958800-91972000	Weak transcription	Brain Angular Gyrus	brain
26	chr8:91959200-91969800	Weak transcription	Aorta	Aorta
27	chr8:91959200-91974600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:91960600-91966400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:91960600-91974800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:91960600-91975200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:91960600-91976000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr8:91960800-91972000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:91961200-91972200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr8:91961200-91975400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr8:91961200-91976000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:91961400-91965600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr8:91961600-91975000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr8:91962600-91966200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:91963000-91975000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:91963600-91975800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr8:91963600-91979000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr8:91964000-91966200	Strong transcription	Colon Smooth Muscle	Colon
43	chr8:91964200-91964800	Strong transcription	Ovary	ovary
44	chr8:91964600-91972000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:91964600-91989800	Weak transcription	Left Ventricle	heart

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