Variant report

Variant	rs2340860
Chromosome Location	chr2:151455164-151455165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10202222	0.88[AFR][1000 genomes]
rs10497065	0.87[ASN][1000 genomes]
rs10497066	0.86[ASN][1000 genomes]
rs11685634	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12692786	0.85[ASN][1000 genomes]
rs12692788	0.87[ASN][1000 genomes]
rs12692789	0.87[ASN][1000 genomes]
rs13012442	0.87[ASN][1000 genomes]
rs13390664	0.87[ASN][1000 genomes]
rs13413391	0.85[ASN][1000 genomes]
rs13419254	0.85[ASN][1000 genomes]
rs16828469	0.87[ASN][1000 genomes]
rs2290813	0.85[ASN][1000 genomes]
rs2290814	0.85[ASN][1000 genomes]
rs2340861	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2340862	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2340863	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2341079	0.87[ASN][1000 genomes]
rs2879927	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34463872	0.89[ASN][1000 genomes]
rs34871167	0.87[ASN][1000 genomes]
rs35926151	0.86[ASN][1000 genomes]
rs4233661	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4271766	0.87[ASN][1000 genomes]
rs4664659	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4664694	0.87[ASN][1000 genomes]
rs4664698	0.86[ASN][1000 genomes]
rs4664699	0.86[ASN][1000 genomes]
rs6758119	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71413702	0.87[ASN][1000 genomes]
rs72867495	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv834415	chr2:151374254-151558649	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151449000-151457600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:151452600-151457800	Weak transcription	Aorta	Aorta
3	chr2:151453600-151455800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:151453600-151457400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:151453600-151457400	Weak transcription	HSMM	muscle
6	chr2:151453800-151457000	Weak transcription	HSMMtube	muscle
7	chr2:151453800-151457800	Weak transcription	NH-A	brain
8	chr2:151454600-151455400	Enhancers	Dnd41	blood
9	chr2:151454800-151455400	Enhancers	Osteobl	bone
10	chr2:151454800-151455600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:151454800-151455600	Enhancers	Liver	Liver
12	chr2:151454800-151458000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:151454800-151458000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:151455000-151455200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:151455000-151455400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:151455000-151455400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr2:151455000-151455400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:151455000-151455400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:151455000-151455400	Enhancers	Adipose Nuclei	Adipose
20	chr2:151455000-151455400	Enhancers	Fetal Muscle Leg	muscle
21	chr2:151455000-151455400	Enhancers	NHLF	lung
22	chr2:151455000-151455600	Enhancers	NHDF-Ad	bronchial

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