Variant report

Variant	rs4233661
Chromosome Location	chr2:151444333-151444334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:151384979..151386756-chr2:151443074..151444971,2	MCF-7	breast:
2	chr2:151424044..151425573-chr2:151443344..151445218,2	MCF-7	breast:
3	chr2:151340454..151344785-chr2:151441787..151446724,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10202222	0.82[CHB][hapmap];0.95[YRI][hapmap]
rs10497065	0.85[ASN][1000 genomes]
rs10497066	0.84[ASN][1000 genomes]
rs11685634	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12692786	0.82[ASN][1000 genomes]
rs12692788	0.85[ASN][1000 genomes]
rs12692789	0.85[ASN][1000 genomes]
rs13012442	0.85[ASN][1000 genomes]
rs13390664	0.85[ASN][1000 genomes]
rs13413391	0.82[ASN][1000 genomes]
rs13419254	0.82[ASN][1000 genomes]
rs16828469	0.85[ASN][1000 genomes]
rs2290813	0.83[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2290814	0.82[ASN][1000 genomes]
rs2340860	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2340861	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2340862	0.95[YRI][hapmap]
rs2340863	0.80[AMR][1000 genomes]
rs2341079	0.85[ASN][1000 genomes]
rs2879927	0.86[CEU][hapmap];0.95[YRI][hapmap]
rs34463872	0.86[ASN][1000 genomes]
rs34871167	0.85[ASN][1000 genomes]
rs35926151	0.83[ASN][1000 genomes]
rs4271766	0.85[ASN][1000 genomes]
rs4438475	0.83[AMR][1000 genomes]
rs4635532	0.95[YRI][hapmap]
rs4664659	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4664694	0.85[ASN][1000 genomes]
rs4664698	0.83[ASN][1000 genomes]
rs4664699	0.83[ASN][1000 genomes]
rs6720091	0.82[YRI][hapmap];0.85[AMR][1000 genomes]
rs6758119	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs71413702	0.85[ASN][1000 genomes]
rs72867495	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv834415	chr2:151374254-151558649	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151440800-151445400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:151441400-151445800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:151441600-151445000	Enhancers	Osteobl	bone
4	chr2:151441800-151445400	Enhancers	NHLF	lung
5	chr2:151442000-151445200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:151442200-151444600	Enhancers	NH-A	brain
7	chr2:151442400-151444600	Enhancers	HMEC	breast
8	chr2:151442400-151445200	Enhancers	HSMM	muscle
9	chr2:151442400-151445200	Enhancers	HSMMtube	muscle
10	chr2:151442600-151444400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:151442600-151445400	Enhancers	A549	lung
12	chr2:151442600-151446600	Enhancers	Fetal Brain Male	brain
13	chr2:151442800-151444400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:151442800-151444600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:151442800-151445200	Enhancers	Fetal Brain Female	brain
16	chr2:151443000-151445200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr2:151443200-151444600	Enhancers	Liver	Liver
18	chr2:151443200-151444600	Enhancers	NHEK	skin
19	chr2:151443200-151445000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:151443400-151444400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:151443400-151444600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:151443400-151444600	Enhancers	Ovary	ovary
23	chr2:151443400-151445400	Enhancers	Adipose Nuclei	Adipose
24	chr2:151443400-151445400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr2:151443400-151446400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:151443600-151450400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr2:151443800-151444800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:151443800-151445000	Flanking Active TSS	NHDF-Ad	bronchial
29	chr2:151444000-151444400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr2:151444000-151444400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr2:151444000-151444600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr2:151444000-151444600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr2:151444000-151444600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr2:151444000-151444800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr2:151444000-151445200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:151444000-151445200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:151444000-151445200	Enhancers	Fetal Lung	lung
38	chr2:151444200-151444400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr2:151444200-151444400	Enhancers	Fetal Kidney	kidney
40	chr2:151444200-151444600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:151444200-151445400	Enhancers	Fetal Muscle Leg	muscle

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