Variant report

Variant	rs2341579
Chromosome Location	chr7:3588836-3588837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10215198	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10226719	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10245071	0.81[ASN][1000 genomes]
rs10257937	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10485876	0.85[ASN][1000 genomes]
rs10951207	0.80[EUR][1000 genomes]
rs10951265	0.85[ASN][1000 genomes]
rs10951266	0.85[ASN][1000 genomes]
rs10951272	0.85[ASN][1000 genomes]
rs10951273	0.85[ASN][1000 genomes]
rs11763915	0.85[ASN][1000 genomes]
rs11768609	0.85[ASN][1000 genomes]
rs11769660	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11770829	0.85[ASN][1000 genomes]
rs11771990	0.85[ASN][1000 genomes]
rs12531560	0.85[ASN][1000 genomes]
rs12533563	0.85[ASN][1000 genomes]
rs12534865	0.85[ASN][1000 genomes]
rs12535467	0.85[ASN][1000 genomes]
rs12536371	0.85[ASN][1000 genomes]
rs12536753	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537980	0.85[ASN][1000 genomes]
rs12538202	0.85[ASN][1000 genomes]
rs12539289	0.85[ASN][1000 genomes]
rs12539805	0.91[ASN][1000 genomes]
rs12540148	0.85[ASN][1000 genomes]
rs12540209	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12701005	0.88[ASN][1000 genomes]
rs12701014	0.81[ASN][1000 genomes]
rs13239833	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13240060	0.85[ASN][1000 genomes]
rs13240393	0.88[ASN][1000 genomes]
rs13242531	0.85[ASN][1000 genomes]
rs17320730	0.81[ASN][1000 genomes]
rs1922011	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1922016	0.85[ASN][1000 genomes]
rs2002669	0.81[ASN][1000 genomes]
rs2033441	0.85[ASN][1000 genomes]
rs2082360	0.85[ASN][1000 genomes]
rs2099302	0.85[ASN][1000 genomes]
rs2341580	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614950	0.94[ASN][1000 genomes]
rs2614951	0.94[ASN][1000 genomes]
rs2614955	0.83[ASN][1000 genomes]
rs2686851	0.85[ASN][1000 genomes]
rs2705609	0.85[ASN][1000 genomes]
rs2705614	0.85[ASN][1000 genomes]
rs2880085	0.85[ASN][1000 genomes]
rs34108699	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34188874	0.85[ASN][1000 genomes]
rs34263851	0.85[ASN][1000 genomes]
rs34369020	0.85[ASN][1000 genomes]
rs34703718	0.88[ASN][1000 genomes]
rs34784806	0.85[ASN][1000 genomes]
rs35513976	0.85[ASN][1000 genomes]
rs35635220	0.85[ASN][1000 genomes]
rs36005986	0.85[ASN][1000 genomes]
rs4342491	0.85[ASN][1000 genomes]
rs4719998	0.85[ASN][1000 genomes]
rs4719999	0.85[ASN][1000 genomes]
rs4720001	0.82[ASN][1000 genomes]
rs4722903	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4722951	0.81[AMR][1000 genomes]
rs4722976	0.85[ASN][1000 genomes]
rs4722993	0.85[ASN][1000 genomes]
rs4722994	0.81[ASN][1000 genomes]
rs4722995	0.85[ASN][1000 genomes]
rs4722997	0.85[ASN][1000 genomes]
rs62437895	0.85[ASN][1000 genomes]
rs62437901	0.85[ASN][1000 genomes]
rs6462216	0.85[ASN][1000 genomes]
rs67062941	0.85[ASN][1000 genomes]
rs6956079	0.85[ASN][1000 genomes]
rs6974350	0.85[ASN][1000 genomes]
rs6974872	0.81[ASN][1000 genomes]
rs71527450	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs956393	0.85[ASN][1000 genomes]
rs968775	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2764026	chr7:3365002-3618361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv528715	chr7:3451251-3598581	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv605902	chr7:3464896-3598581	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1034716	chr7:3512406-3616155	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv887334	chr7:3531275-3635105	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1023888	chr7:3539750-3638242	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1034298	chr7:3539750-3646251	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1029264	chr7:3549193-3622532	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1032031	chr7:3554760-3609584	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv538675	chr7:3554760-3609584	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv464271	chr7:3556132-3605340	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv605905	chr7:3556132-3605340	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1025623	chr7:3558521-3606640	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv605906	chr7:3559826-3605340	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1027274	chr7:3561252-3602457	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv538676	chr7:3561252-3602457	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1034671	chr7:3565156-3607294	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv538677	chr7:3565156-3607294	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv1028274	chr7:3565356-3607155	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv538678	chr7:3565356-3607155	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv1840932	chr7:3585560-3618827	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3577600-3600200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:3578800-3593200	Weak transcription	Aorta	Aorta
3	chr7:3585400-3590000	Weak transcription	Pancreas	Pancrea
4	chr7:3586400-3593400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:3587400-3589600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:3587400-3589800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:3587400-3590200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:3587600-3593000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:3588000-3589200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:3588200-3589200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:3588200-3590200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:3588400-3589000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr7:3588600-3589000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr7:3588600-3590200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:3588800-3589000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr7:3588800-3589200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:3588800-3589600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:3588800-3589800	Enhancers	Fetal Lung	lung
19	chr7:3588800-3590200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:3588800-3593000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:3588800-3598000	Weak transcription	Gastric	stomach

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