Variant report
Variant | rs34369020 |
---|---|
Chromosome Location | chr7:3661254-3661255 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:3657416..3659816-chr7:3660917..3663637,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10215198 | 0.83[ASN][1000 genomes] |
rs10226719 | 0.94[ASN][1000 genomes] |
rs10245071 | 0.94[ASN][1000 genomes] |
rs10257937 | 0.88[ASN][1000 genomes] |
rs10485876 | 1.00[ASN][1000 genomes] |
rs10951265 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10951266 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10951272 | 1.00[ASN][1000 genomes] |
rs10951273 | 1.00[ASN][1000 genomes] |
rs11763915 | 1.00[ASN][1000 genomes] |
rs11765058 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs11766767 | 0.97[ASN][1000 genomes] |
rs11768609 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11769660 | 0.81[ASN][1000 genomes] |
rs11770829 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11771990 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12531560 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12533563 | 1.00[ASN][1000 genomes] |
rs12534865 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12535467 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12536371 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12536753 | 0.85[ASN][1000 genomes] |
rs12537980 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12538202 | 1.00[ASN][1000 genomes] |
rs12539289 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12539805 | 0.94[ASN][1000 genomes] |
rs12540148 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12540209 | 0.94[ASN][1000 genomes] |
rs12701005 | 0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs12701014 | 0.94[ASN][1000 genomes] |
rs13223065 | 0.82[ASN][1000 genomes] |
rs13223852 | 0.82[ASN][1000 genomes] |
rs13239833 | 0.88[ASN][1000 genomes] |
rs13240060 | 1.00[ASN][1000 genomes] |
rs13240393 | 0.97[ASN][1000 genomes] |
rs13242531 | 1.00[ASN][1000 genomes] |
rs13247619 | 0.87[ASN][1000 genomes] |
rs17320730 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1922011 | 0.83[ASN][1000 genomes] |
rs1922016 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2002669 | 0.94[ASN][1000 genomes] |
rs2033441 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2082360 | 1.00[ASN][1000 genomes] |
rs2099302 | 1.00[ASN][1000 genomes] |
rs2341579 | 0.85[ASN][1000 genomes] |
rs2341580 | 0.85[ASN][1000 genomes] |
rs2341585 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs2341586 | 0.82[ASN][1000 genomes] |
rs2614950 | 0.91[ASN][1000 genomes] |
rs2614951 | 0.91[ASN][1000 genomes] |
rs2614955 | 0.81[ASN][1000 genomes] |
rs2686851 | 0.83[ASN][1000 genomes] |
rs2705604 | 0.82[ASN][1000 genomes] |
rs2705609 | 0.83[ASN][1000 genomes] |
rs2705614 | 0.83[ASN][1000 genomes] |
rs2880085 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2880086 | 0.89[EUR][1000 genomes] |
rs34008696 | 0.82[AMR][1000 genomes] |
rs34024103 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs34108699 | 0.88[ASN][1000 genomes] |
rs34188874 | 1.00[ASN][1000 genomes] |
rs34263851 | 1.00[ASN][1000 genomes] |
rs34703718 | 0.80[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs34704704 | 0.82[ASN][1000 genomes] |
rs34784806 | 1.00[ASN][1000 genomes] |
rs34872052 | 0.82[ASN][1000 genomes] |
rs34953429 | 0.82[ASN][1000 genomes] |
rs35453716 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs35513976 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35635220 | 1.00[ASN][1000 genomes] |
rs35669868 | 0.82[ASN][1000 genomes] |
rs36005986 | 1.00[ASN][1000 genomes] |
rs3919653 | 0.87[ASN][1000 genomes] |
rs4342491 | 1.00[ASN][1000 genomes] |
rs4719998 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4719999 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4720001 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4722903 | 0.86[ASN][1000 genomes] |
rs4722976 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4722993 | 1.00[ASN][1000 genomes] |
rs4722994 | 0.94[ASN][1000 genomes] |
rs4722995 | 1.00[ASN][1000 genomes] |
rs4722997 | 1.00[ASN][1000 genomes] |
rs4723001 | 0.92[ASN][1000 genomes] |
rs62437874 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs62437895 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62437901 | 1.00[ASN][1000 genomes] |
rs62440182 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs6462216 | 1.00[ASN][1000 genomes] |
rs67062941 | 1.00[ASN][1000 genomes] |
rs6956079 | 1.00[ASN][1000 genomes] |
rs6974350 | 1.00[ASN][1000 genomes] |
rs6974872 | 0.94[ASN][1000 genomes] |
rs71527450 | 0.89[ASN][1000 genomes] |
rs73037689 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs956393 | 1.00[ASN][1000 genomes] |
rs968775 | 0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1018173 | chr7:3258989-3879848 | Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv538660 | chr7:3258989-3879848 | Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1016555 | chr7:3298478-3872512 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv538661 | chr7:3298478-3872512 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv916071 | chr7:3423207-3697428 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv830888 | chr7:3577214-3776276 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | esv1792280 | chr7:3592290-3668229 | Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv948390 | chr7:3609821-3734421 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1033415 | chr7:3616095-3753563 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | nsv538680 | chr7:3616095-3753563 | Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | nsv1016930 | chr7:3627295-3705057 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
12 | nsv530553 | chr7:3629504-3736851 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv1016270 | chr7:3650882-3753563 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
14 | nsv538681 | chr7:3650882-3753563 | Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
15 | nsv605928 | chr7:3654580-3665040 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:3649600-3673400 | Weak transcription | Pancreas | Pancrea |
2 | chr7:3654400-3667600 | Weak transcription | Colon Smooth Muscle | Colon |
3 | chr7:3655400-3662000 | Weak transcription | Fetal Lung | lung |
4 | chr7:3656800-3668800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
5 | chr7:3657400-3665000 | Weak transcription | Spleen | Spleen |
6 | chr7:3657400-3669800 | Weak transcription | Fetal Stomach | stomach |
7 | chr7:3659200-3684400 | Weak transcription | Right Ventricle | heart |
8 | chr7:3660800-3663400 | Weak transcription | Aorta | Aorta |
9 | chr7:3660800-3666200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
10 | chr7:3660800-3666600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |