Variant report

Variant	rs2341586
Chromosome Location	chr7:3638442-3638443
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1010002	0.82[JPT][hapmap]
rs10226719	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10235617	0.82[JPT][hapmap]
rs10237328	0.82[JPT][hapmap]
rs10245071	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs10264803	0.82[JPT][hapmap]
rs10274012	0.82[JPT][hapmap]
rs10485876	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10951207	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs10951255	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10951265	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10951266	0.82[ASN][1000 genomes]
rs10951272	0.82[ASN][1000 genomes]
rs10951273	0.82[ASN][1000 genomes]
rs11760339	0.82[JPT][hapmap]
rs11763915	0.82[ASN][1000 genomes]
rs11765058	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766767	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs11768609	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11770829	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11771990	0.82[ASN][1000 genomes]
rs11773388	0.82[JPT][hapmap]
rs12531560	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12531698	0.84[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533563	0.82[ASN][1000 genomes]
rs12534865	0.82[ASN][1000 genomes]
rs12535467	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12536371	0.82[ASN][1000 genomes]
rs12537980	0.82[ASN][1000 genomes]
rs12538202	0.82[ASN][1000 genomes]
rs12539289	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12539805	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12540148	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12540209	0.82[ASN][1000 genomes]
rs12701005	0.95[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12701014	0.82[JPT][hapmap]
rs13223065	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240060	0.82[ASN][1000 genomes]
rs13240393	0.85[ASN][1000 genomes]
rs13242531	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17320730	0.82[JPT][hapmap]
rs1922016	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2033441	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2082360	0.82[ASN][1000 genomes]
rs2099302	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2341583	0.84[EUR][1000 genomes]
rs2341584	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2341585	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614955	0.82[JPT][hapmap]
rs2614957	0.82[JPT][hapmap]
rs2614970	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2705604	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2705609	0.82[JPT][hapmap]
rs2705612	0.96[ASN][1000 genomes]
rs2880085	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs34008696	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34015199	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34024103	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34188874	0.82[ASN][1000 genomes]
rs34227479	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34263851	0.82[ASN][1000 genomes]
rs34369020	0.82[ASN][1000 genomes]
rs34703718	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34704704	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34784806	0.82[ASN][1000 genomes]
rs34872052	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953429	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35453716	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35513976	0.82[ASN][1000 genomes]
rs35635220	0.82[ASN][1000 genomes]
rs35669868	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35748921	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36005986	0.82[ASN][1000 genomes]
rs3919653	0.82[JPT][hapmap]
rs4342491	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4719964	0.82[JPT][hapmap]
rs4719998	0.82[ASN][1000 genomes]
rs4719999	0.82[ASN][1000 genomes]
rs4722903	1.00[JPT][hapmap]
rs4722951	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs4722976	0.82[ASN][1000 genomes]
rs4722993	0.82[ASN][1000 genomes]
rs4722995	0.82[ASN][1000 genomes]
rs4722997	0.82[ASN][1000 genomes]
rs4723001	0.82[JPT][hapmap]
rs56105954	0.82[EUR][1000 genomes]
rs62437874	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62437895	0.82[ASN][1000 genomes]
rs62437901	0.82[ASN][1000 genomes]
rs62440182	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462216	0.82[ASN][1000 genomes]
rs67062941	0.82[ASN][1000 genomes]
rs6956079	0.82[ASN][1000 genomes]
rs6974350	0.82[ASN][1000 genomes]
rs73037689	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956393	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9648355	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs968775	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1034298	chr7:3539750-3646251	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1792280	chr7:3592290-3668229	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv605909	chr7:3605340-3638547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3633400-3645800	Weak transcription	Pancreas	Pancrea
2	chr7:3635800-3639400	Enhancers	Primary B cells from peripheral blood	blood
3	chr7:3636400-3655800	Weak transcription	Aorta	Aorta
4	chr7:3637200-3639800	Enhancers	Primary B cells from cord blood	blood
5	chr7:3638000-3639600	Enhancers	Fetal Brain Female	brain
6	chr7:3638200-3639200	Enhancers	Fetal Brain Male	brain
7	chr7:3638200-3639200	Enhancers	Fetal Heart	heart
8	chr7:3638400-3638600	Enhancers	Pancreatic Islets	Pancreatic Islet

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