Variant report

Variant rs2342309
Chromosome Location chr3:195963910-195963911
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:195944200-195964000 Weak transcription H9 Cell Line embryonic stem cell
2 chr3:195945000-195968400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr3:195946600-195965600 Weak transcription H1 Cell Line embryonic stem cell
4 chr3:195946800-195964200 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr3:195946800-195967400 Weak transcription iPS-20b Cell Line embryonic stem cell
6 chr3:195947000-195964000 Weak transcription Colonic Mucosa Colon
7 chr3:195948000-195970400 Strong transcription Liver Liver
8 chr3:195950400-195964400 Weak transcription HUES48 Cell Line embryonic stem cell
9 chr3:195954600-195964600 Weak transcription Brain Angular Gyrus brain
10 chr3:195954600-195964800 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr3:195954800-195964600 Weak transcription NHDF-Ad bronchial
12 chr3:195954800-195968600 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr3:195955000-195964000 Weak transcription Fetal Lung lung
14 chr3:195955200-195964200 Weak transcription HSMM muscle
15 chr3:195955400-195964000 Weak transcription Placenta Amnion Placenta Amnion
16 chr3:195955400-195968400 Weak transcription Pancreas Pancrea
17 chr3:195955600-195964200 Weak transcription HSMMtube muscle
18 chr3:195956000-195969800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr3:195957000-195964200 Weak transcription Esophagus oesophagus
20 chr3:195957400-195964400 Weak transcription Primary hematopoietic stem cells blood
21 chr3:195957600-195964000 Weak transcription Brain Substantia Nigra brain
22 chr3:195958200-195965800 Strong transcription Fetal Intestine Small intestine
23 chr3:195959400-195968600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr3:195959600-195964400 Weak transcription HUVEC blood vessel
25 chr3:195959600-195978200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr3:195959800-195964000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr3:195959800-195965400 Strong transcription Fetal Adrenal Gland Adrenal Gland
28 chr3:195959800-195970000 Strong transcription Duodenum Mucosa Duodenum
29 chr3:195960000-195964000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr3:195960000-195967600 Weak transcription Hela-S3 cervix
31 chr3:195960400-195964000 Weak transcription HepG2 liver
32 chr3:195960800-195964200 Weak transcription Ovary ovary
33 chr3:195960800-195966200 Weak transcription Psoas Muscle Psoas
34 chr3:195960800-195967200 Strong transcription Fetal Intestine Large intestine
35 chr3:195961000-195964200 Weak transcription Fetal Kidney kidney
36 chr3:195961000-195969800 Strong transcription Fetal Muscle Leg muscle
37 chr3:195961200-195964200 Weak transcription A549 lung
38 chr3:195961200-195969800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr3:195961200-195970400 Strong transcription Monocytes-CD14+_RO01746 blood
40 chr3:195961400-195969800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr3:195961600-195973800 Weak transcription Stomach Mucosa stomach
42 chr3:195962000-195967400 Strong transcription NHLF lung
43 chr3:195962200-195964200 Weak transcription Primary T helper cells fromperipheralblood blood
44 chr3:195962200-195964200 Genic enhancers GM12878-XiMat blood
45 chr3:195962200-195965000 Weak transcription Colon Smooth Muscle Colon
46 chr3:195962200-195966600 Strong transcription Muscle Satellite Cultured Cells --
47 chr3:195962200-195966800 Strong transcription Skeletal Muscle Female skeletal muscle
48 chr3:195962200-195969800 Strong transcription Rectal Mucosa Donor 29 rectum
49 chr3:195962200-195970000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr3:195962200-195970400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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