Variant report

Variant	rs234358
Chromosome Location	chr19:40535876-40535877
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs163212	0.87[AFR][1000 genomes]
rs234300	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs234305	1.00[AMR][1000 genomes]
rs234311	1.00[AMR][1000 genomes]
rs234320	1.00[AMR][1000 genomes]
rs234350	1.00[AMR][1000 genomes]
rs234372	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28746189	1.00[AMR][1000 genomes]
rs3000955	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs337781	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs337797	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs405461	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs421421	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57469004	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61407485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40521200-40540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:40528600-40543800	ZNF genes & repeats	Liver	Liver
3	chr19:40529000-40543800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:40529200-40543800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:40529200-40543800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:40530600-40543800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:40535000-40543800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr19:40535600-40542400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr19:40535800-40536400	ZNF genes & repeats	Brain Germinal Matrix	brain
10	chr19:40535800-40536800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr19:40535800-40542400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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