The 2.0 version of rSNPBase

Variant report

Variant rs163212
Chromosome Location chr19:40556035-40556036
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40549000-40556800 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
2 chr19:40549000-40556800 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr19:40549000-40559800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr19:40549200-40556400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr19:40549200-40556800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr19:40549200-40556800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
7 chr19:40549200-40556800 Strong transcription Primary T helper naive cells fromperipheralblood blood
8 chr19:40549200-40556800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr19:40549200-40556800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr19:40549200-40556800 ZNF genes & repeats Brain Germinal Matrix brain
11 chr19:40549200-40556800 ZNF genes & repeats Fetal Brain Female brain
12 chr19:40549200-40556800 ZNF genes & repeats Fetal Kidney kidney
13 chr19:40549200-40556800 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
14 chr19:40549200-40557800 ZNF genes & repeats Liver Liver
15 chr19:40549400-40556800 Strong transcription Primary T cells fromperipheralblood blood
16 chr19:40549400-40556800 ZNF genes & repeats Primary hematopoietic stem cells blood
17 chr19:40549400-40556800 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
18 chr19:40549400-40556800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
19 chr19:40549600-40556800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr19:40549600-40556800 Strong transcription Rectal Smooth Muscle rectum
21 chr19:40549800-40556800 ZNF genes & repeats A549 lung
22 chr19:40549800-40557000 ZNF genes & repeats GM12878-XiMat blood
23 chr19:40550000-40556800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
24 chr19:40550000-40561200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr19:40550400-40557000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr19:40550600-40556800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr19:40550600-40556800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
28 chr19:40550600-40556800 Strong transcription Skeletal Muscle Male skeletal muscle
29 chr19:40550600-40560600 Weak transcription Stomach Mucosa stomach
30 chr19:40551000-40556600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
31 chr19:40551200-40556800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr19:40551200-40556800 ZNF genes & repeats Fetal Brain Male brain
33 chr19:40551200-40556800 Strong transcription Skeletal Muscle Female skeletal muscle
34 chr19:40551400-40556200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr19:40551400-40556800 Strong transcription Rectal Mucosa Donor 29 rectum
36 chr19:40551400-40556800 Strong transcription Right Ventricle heart
37 chr19:40551600-40556800 Strong transcription Primary B cells from peripheral blood blood
38 chr19:40551600-40556800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
39 chr19:40551600-40556800 Strong transcription Primary T helper cells fromperipheralblood blood
40 chr19:40551600-40556800 ZNF genes & repeats Aorta Aorta
41 chr19:40551600-40556800 ZNF genes & repeats Fetal Intestine Small intestine
42 chr19:40551800-40556800 Strong transcription Pancreas Pancrea
43 chr19:40551800-40556800 Strong transcription Sigmoid Colon Sigmoid Colon
44 chr19:40552000-40556800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr19:40552000-40556800 ZNF genes & repeats Fetal Muscle Leg muscle
46 chr19:40552200-40556800 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
47 chr19:40552400-40556400 Strong transcription Esophagus oesophagus
48 chr19:40552400-40556600 ZNF genes & repeats Spleen Spleen
49 chr19:40552400-40556800 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr19:40552600-40556800 Strong transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015