Variant report

Variant	rs58019075
Chromosome Location	chr19:40654743-40654744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11083545	1.00[EUR][1000 genomes]
rs12151011	1.00[EUR][1000 genomes]
rs12151020	1.00[EUR][1000 genomes]
rs12151029	1.00[EUR][1000 genomes]
rs12151197	1.00[EUR][1000 genomes]
rs12373514	1.00[EUR][1000 genomes]
rs163212	0.87[AFR][1000 genomes]
rs234300	0.87[AFR][1000 genomes]
rs28589691	0.86[EUR][1000 genomes]
rs3000955	0.87[AFR][1000 genomes]
rs337781	0.87[AFR][1000 genomes]
rs337797	0.87[AFR][1000 genomes]
rs405461	0.87[AFR][1000 genomes]
rs421421	0.87[AFR][1000 genomes]
rs55787243	1.00[EUR][1000 genomes]
rs57469004	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv911697	chr19:40599603-40711333	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv3336591	chr19:40647161-40670363	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40648800-40655000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr19:40653000-40654800	Enhancers	Primary hematopoietic stem cells	blood
3	chr19:40654200-40673400	Weak transcription	Right Atrium	heart
4	chr19:40654400-40655400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:40654400-40658200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:40654400-40658600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:40654400-40661000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr19:40654600-40654800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr19:40654600-40655600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr19:40654600-40655600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr19:40654600-40655600	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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