Variant report

Variant	rs28589691
Chromosome Location	chr19:40528419-40528420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10410695	0.93[AMR][1000 genomes]
rs11083545	0.86[EUR][1000 genomes]
rs12151011	0.86[EUR][1000 genomes]
rs12151020	0.86[EUR][1000 genomes]
rs12151029	0.86[EUR][1000 genomes]
rs12151197	0.86[EUR][1000 genomes]
rs12373514	0.86[EUR][1000 genomes]
rs170898	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs234316	0.93[AMR][1000 genomes]
rs234319	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs234321	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs234322	0.93[AMR][1000 genomes]
rs234339	0.93[AMR][1000 genomes]
rs234342	0.93[AMR][1000 genomes]
rs2542311	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28661993	0.93[AMR][1000 genomes]
rs55787243	0.86[EUR][1000 genomes]
rs58019075	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40504000-40533800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:40521200-40540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr19:40524600-40529400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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