Variant report

Variant	rs12151197
Chromosome Location	chr19:40524543-40524544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11083545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12151011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12151020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12151029	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12373514	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28589691	0.86[EUR][1000 genomes]
rs55787243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58019075	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40504000-40533800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:40512000-40527200	ZNF genes & repeats	Liver	Liver
3	chr19:40521200-40540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr19:40523600-40524800	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:40524400-40524600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr19:40524400-40524600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:40524400-40524800	ZNF genes & repeats	Aorta	Aorta
8	chr19:40524400-40525000	ZNF genes & repeats	Brain Anterior Caudate	brain
9	chr19:40524400-40525000	ZNF genes & repeats	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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