Variant report

Variant	rs73551672
Chromosome Location	chr19:40648933-40648934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10414087	0.83[ASN][1000 genomes]
rs10418532	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10421829	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10424773	0.83[ASN][1000 genomes]
rs11881677	0.83[ASN][1000 genomes]
rs11882464	0.83[ASN][1000 genomes]
rs11882490	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs163212	0.83[ASN][1000 genomes]
rs234329	0.83[ASN][1000 genomes]
rs234338	0.83[ASN][1000 genomes]
rs2531363	0.83[ASN][1000 genomes]
rs28669038	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs337796	0.83[ASN][1000 genomes]
rs383975	0.83[ASN][1000 genomes]
rs399405	0.83[ASN][1000 genomes]
rs420413	0.83[ASN][1000 genomes]
rs445379	0.83[ASN][1000 genomes]
rs517342	0.83[ASN][1000 genomes]
rs520877	0.83[ASN][1000 genomes]
rs526467	0.83[ASN][1000 genomes]
rs532235	0.83[ASN][1000 genomes]
rs563703	0.83[ASN][1000 genomes]
rs589279	0.83[ASN][1000 genomes]
rs589404	0.83[ASN][1000 genomes]
rs62106576	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62106577	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62106578	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62106580	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62106581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62106584	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62106585	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62106586	0.83[ASN][1000 genomes]
rs62106587	0.83[ASN][1000 genomes]
rs62106588	0.83[ASN][1000 genomes]
rs62106589	0.83[ASN][1000 genomes]
rs62106590	0.83[ASN][1000 genomes]
rs62106591	0.83[ASN][1000 genomes]
rs62106625	0.83[ASN][1000 genomes]
rs62106626	0.83[ASN][1000 genomes]
rs62108934	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62110063	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs623196	0.83[ASN][1000 genomes]
rs636313	0.83[ASN][1000 genomes]
rs649239	0.83[ASN][1000 genomes]
rs6508931	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6508932	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs667850	0.83[ASN][1000 genomes]
rs7250244	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7250298	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7259136	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7260610	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73553618	0.83[ASN][1000 genomes]
rs8103746	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8103807	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8104932	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8105260	0.83[ASN][1000 genomes]
rs8108062	0.83[ASN][1000 genomes]
rs8108857	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv911697	chr19:40599603-40711333	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv3336591	chr19:40647161-40670363	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40647400-40654400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr19:40647800-40649000	Enhancers	Primary B cells from cord blood	blood
3	chr19:40647800-40649400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr19:40647800-40654000	Enhancers	Primary B cells from peripheral blood	blood
5	chr19:40648000-40652200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr19:40648000-40652400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr19:40648000-40654200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr19:40648200-40649200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:40648200-40649400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr19:40648200-40654600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr19:40648400-40649000	Flanking Active TSS	GM12878-XiMat	blood
12	chr19:40648400-40649800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr19:40648400-40650000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr19:40648400-40650200	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr19:40648400-40652400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr19:40648400-40652600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr19:40648600-40649200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr19:40648600-40650200	Weak transcription	Adipose Nuclei	Adipose
19	chr19:40648600-40653200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr19:40648600-40653200	Weak transcription	Hela-S3	cervix
21	chr19:40648800-40649200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr19:40648800-40649800	Enhancers	Primary hematopoietic stem cells	blood
23	chr19:40648800-40651200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr19:40648800-40655000	Enhancers	Primary monocytes fromperipheralblood	blood

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