Variant report

Variant	rs337796
Chromosome Location	chr19:40582781-40582782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40577073..40578662-chr19:40580637..40583463,2	K562	blood:
2	chr19:40582703..40584823-chr19:40586769..40589020,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10414087	1.00[ASN][1000 genomes]
rs10418532	1.00[ASN][1000 genomes]
rs10421829	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10424773	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11881677	1.00[ASN][1000 genomes]
rs11882464	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11882490	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs163212	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16973959	1.00[CHB][hapmap]
rs17756648	0.83[ASN][1000 genomes]
rs234316	0.85[YRI][hapmap]
rs234322	0.81[YRI][hapmap]
rs234327	0.81[YRI][hapmap]
rs234329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs234338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs234347	1.00[CHB][hapmap]
rs234348	1.00[CHB][hapmap]
rs234359	0.92[YRI][hapmap]
rs234362	1.00[CHB][hapmap]
rs234363	1.00[CHB][hapmap]
rs234367	1.00[CHB][hapmap]
rs234369	1.00[CHB][hapmap]
rs2531363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2542311	0.92[YRI][hapmap]
rs28669038	1.00[ASN][1000 genomes]
rs383975	1.00[ASN][1000 genomes]
rs399405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs445379	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517342	1.00[ASN][1000 genomes]
rs520877	1.00[ASN][1000 genomes]
rs526467	1.00[ASN][1000 genomes]
rs532235	1.00[ASN][1000 genomes]
rs563703	1.00[ASN][1000 genomes]
rs589279	1.00[ASN][1000 genomes]
rs589404	1.00[ASN][1000 genomes]
rs60798356	0.87[EUR][1000 genomes]
rs62106576	1.00[ASN][1000 genomes]
rs62106577	1.00[ASN][1000 genomes]
rs62106578	1.00[ASN][1000 genomes]
rs62106580	0.83[ASN][1000 genomes]
rs62106581	0.83[ASN][1000 genomes]
rs62106584	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62106585	1.00[ASN][1000 genomes]
rs62106586	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62106587	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62106588	1.00[ASN][1000 genomes]
rs62106589	1.00[ASN][1000 genomes]
rs62106590	1.00[ASN][1000 genomes]
rs62106591	1.00[ASN][1000 genomes]
rs62106625	1.00[ASN][1000 genomes]
rs62106626	1.00[ASN][1000 genomes]
rs62108934	1.00[ASN][1000 genomes]
rs62110063	1.00[ASN][1000 genomes]
rs623196	1.00[ASN][1000 genomes]
rs636313	1.00[ASN][1000 genomes]
rs649239	1.00[ASN][1000 genomes]
rs6508931	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6508932	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs667850	1.00[ASN][1000 genomes]
rs7250244	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7250298	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7259136	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7260610	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73551672	0.83[ASN][1000 genomes]
rs73553618	1.00[ASN][1000 genomes]
rs8103746	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8103807	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8105260	1.00[ASN][1000 genomes]
rs8108062	1.00[ASN][1000 genomes]
rs8108857	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40578600-40586200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
2	chr19:40578600-40586600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:40578600-40586600	ZNF genes & repeats	Liver	Liver
4	chr19:40578600-40586600	ZNF genes & repeats	A549	lung
5	chr19:40578600-40586800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:40578600-40590400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr19:40578800-40583600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
8	chr19:40578800-40586600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr19:40578800-40587200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:40579000-40583200	ZNF genes & repeats	NH-A	brain
11	chr19:40579000-40583400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr19:40579000-40583600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr19:40579000-40583600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr19:40579000-40584600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr19:40579000-40586600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr19:40579000-40587000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:40579000-40587000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr19:40579200-40583400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr19:40579200-40583600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr19:40579200-40583600	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr19:40579200-40583800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr19:40579200-40583800	ZNF genes & repeats	Fetal Lung	lung
23	chr19:40579200-40583800	ZNF genes & repeats	HSMM	muscle
24	chr19:40579200-40584600	ZNF genes & repeats	Fetal Muscle Leg	muscle
25	chr19:40579200-40585000	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr19:40579200-40585600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
27	chr19:40579200-40585600	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr19:40579200-40585800	ZNF genes & repeats	Primary T cells from cord blood	blood
29	chr19:40579200-40586600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
30	chr19:40579200-40586600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
31	chr19:40579200-40586800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:40579200-40586800	ZNF genes & repeats	GM12878-XiMat	blood
33	chr19:40579200-40589600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr19:40579400-40583200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
35	chr19:40579400-40583200	ZNF genes & repeats	HMEC	breast
36	chr19:40579400-40583400	ZNF genes & repeats	Osteobl	bone
37	chr19:40579400-40583600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr19:40579400-40585000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
39	chr19:40579400-40585400	Strong transcription	HepG2	liver
40	chr19:40579400-40590400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr19:40579600-40583400	Strong transcription	Brain Substantia Nigra	brain
42	chr19:40579600-40583600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr19:40579600-40583600	Strong transcription	Brain Hippocampus Middle	brain
44	chr19:40579600-40584000	Strong transcription	Brain Anterior Caudate	brain
45	chr19:40579600-40584400	ZNF genes & repeats	K562	blood
46	chr19:40579600-40586600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
47	chr19:40579600-40590800	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr19:40579600-40591200	Strong transcription	Fetal Thymus	thymus
49	chr19:40579800-40583200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
50	chr19:40579800-40583400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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