Variant report

Variant	rs234359
Chromosome Location	chr19:40537801-40537802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10410695	0.93[AMR][1000 genomes]
rs10421829	0.85[YRI][hapmap]
rs170898	0.91[YRI][hapmap];0.93[AMR][1000 genomes]
rs234316	1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs234319	0.92[YRI][hapmap];0.93[AMR][1000 genomes]
rs234321	0.84[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes]
rs234322	0.96[YRI][hapmap];0.93[AMR][1000 genomes]
rs234327	0.96[YRI][hapmap]
rs234338	0.84[ASW][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap];0.82[AFR][1000 genomes]
rs234339	0.94[YRI][hapmap];0.93[AMR][1000 genomes]
rs234342	0.93[AMR][1000 genomes]
rs2531363	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs2542302	0.84[YRI][hapmap]
rs2542311	0.92[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28589691	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28661993	0.93[AMR][1000 genomes]
rs337796	0.92[YRI][hapmap]
rs34254649	1.00[EUR][1000 genomes]
rs420413	0.82[AFR][1000 genomes]
rs7260610	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40521200-40540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:40528600-40543800	ZNF genes & repeats	Liver	Liver
3	chr19:40529000-40543800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:40529200-40543800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:40529200-40543800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:40530600-40543800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:40535000-40543800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr19:40535600-40542400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr19:40535800-40542400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr19:40536000-40538200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
11	chr19:40536000-40543800	ZNF genes & repeats	Fetal Brain Female	brain
12	chr19:40536400-40543600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr19:40536600-40543800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr19:40537000-40542400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
15	chr19:40537200-40541000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr19:40537400-40542600	ZNF genes & repeats	Dnd41	blood
17	chr19:40537400-40543000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr19:40537400-40543000	ZNF genes & repeats	Brain Anterior Caudate	brain
19	chr19:40537400-40543800	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr19:40537600-40538400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr19:40537600-40543400	ZNF genes & repeats	A549	lung
22	chr19:40537600-40543600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr19:40537800-40539000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr19:40537800-40543200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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