Variant report

Variant	rs2345567
Chromosome Location	chr6:167381803-167381804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167380676..167382734-chr6:167385661..167387748,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11557915	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16899761	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16899805	1.00[AMR][1000 genomes]
rs16899816	1.00[AMR][1000 genomes]
rs16899817	1.00[AMR][1000 genomes]
rs6456145	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899604	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900132	1.00[AMR][1000 genomes]
rs6901171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6921037	1.00[AMR][1000 genomes]
rs6926667	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928981	1.00[AMR][1000 genomes]
rs6935539	1.00[AMR][1000 genomes]
rs7750975	1.00[AMR][1000 genomes]
rs7754877	0.92[AFR][1000 genomes]
rs7759776	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762128	1.00[AMR][1000 genomes]
rs911634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1034359	chr6:167359643-167384714	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167371400-167411000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:167373600-167402400	Weak transcription	Liver	Liver
3	chr6:167373800-167384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:167378800-167398600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:167380200-167383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:167380600-167384200	Weak transcription	Fetal Intestine Small	intestine
7	chr6:167380800-167382800	Weak transcription	NHDF-Ad	bronchial
8	chr6:167380800-167383800	Weak transcription	Placenta	Placenta
9	chr6:167380800-167391000	Weak transcription	Osteobl	bone
10	chr6:167381200-167384200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:167381200-167410000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:167381200-167411000	Weak transcription	Fetal Stomach	stomach
13	chr6:167381600-167382000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:167381600-167382200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:167381600-167385200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:167381800-167382600	Enhancers	Primary T cells from cord blood	blood
17	chr6:167381800-167382600	Weak transcription	Dnd41	blood
18	chr6:167381800-167382800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:167381800-167383000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:167381800-167391200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:167381800-167396200	Weak transcription	HepG2	liver

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