Variant report

Variant	rs2348733
Chromosome Location	chr1:165598262-165598263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:165597885-165598289	K562	blood:	n/a	n/a
2	TEAD4	chr1:165597747-165598278	K562	blood:	n/a	n/a
3	TAL1	chr1:165597711-165598262	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165589382..165591602-chr1:165595692..165598482,2	K562	blood:
2	chr1:165597760..165600070-chr1:165736723..165738244,2	K562	blood:
3	chr1:165595783..165598843-chr1:165605260..165607101,3	K562	blood:
4	chr1:165597575..165602245-chr1:165617678..165620274,4	K562	blood:
5	chr1:165598109..165601268-chr1:165795469..165798298,3	MCF-7	breast:
6	chr1:165597269..165598908-chr1:165600492..165602238,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
MGST3	TF binding region
ENSG00000143183	Chromatin interaction
ENSG00000143179	Chromatin interaction
ENSG00000143198	Chromatin interaction
ENSG00000224358	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10800120	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4147591	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[YRI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4147595	1.00[CEU][hapmap];0.88[CHB][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4147597	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4147598	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4147600	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6426925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6426926	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6694924	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9333387	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2348733	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165594000-165599000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165595200-165599000	Enhancers	K562	blood
3	chr1:165595600-165598600	Weak transcription	Fetal Brain Female	brain
4	chr1:165596000-165599400	Enhancers	Fetal Intestine Small	intestine
5	chr1:165596400-165599400	Enhancers	Fetal Intestine Large	intestine
6	chr1:165597200-165599200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:165597200-165599200	Enhancers	Fetal Heart	heart
8	chr1:165597600-165599000	Enhancers	HepG2	liver
9	chr1:165597800-165598400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:165597800-165599200	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:165597800-165599400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:165598000-165598400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr1:165598000-165599200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr1:165598000-165599200	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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