Variant report

Variant	rs4147600
Chromosome Location	chr1:165605209-165605210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10800120	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271657	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs2348726	0.82[ASN][1000 genomes]
rs2348733	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4147591	0.82[CHB][hapmap]
rs4147595	0.87[CHB][hapmap]
rs4147597	0.93[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4147598	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6426925	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs6426926	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs6674205	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6694924	0.82[CHB][hapmap]
rs9333387	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9333392	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165601600-165605800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165601600-165608400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:165601600-165615200	Weak transcription	Spleen	Spleen
4	chr1:165601800-165607400	Enhancers	Brain Substantia Nigra	brain
5	chr1:165601800-165615200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:165602000-165605600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:165602000-165622800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:165602200-165606000	Enhancers	Brain Anterior Caudate	brain
9	chr1:165602200-165624200	Weak transcription	Dnd41	blood
10	chr1:165602400-165606000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:165602400-165606800	Enhancers	Brain Angular Gyrus	brain
12	chr1:165602400-165614400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:165602400-165614800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:165602400-165615000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr1:165602600-165605400	Weak transcription	Fetal Stomach	stomach
16	chr1:165602600-165605400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr1:165602600-165605800	Enhancers	Right Ventricle	heart
18	chr1:165602600-165606000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:165602600-165606200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:165602600-165606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:165602600-165606600	Weak transcription	HepG2	liver
22	chr1:165602600-165610400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr1:165602600-165615000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:165603000-165606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:165603000-165607000	Weak transcription	Aorta	Aorta
26	chr1:165603000-165614800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr1:165603000-165619800	Weak transcription	HSMMtube	muscle
28	chr1:165603200-165605400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr1:165603200-165607200	Enhancers	Brain Cingulate Gyrus	brain
30	chr1:165603200-165608000	Enhancers	Liver	Liver
31	chr1:165603400-165606600	Weak transcription	HUVEC	blood vessel
32	chr1:165603600-165605400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:165603600-165605400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:165603600-165606000	Weak transcription	Fetal Muscle Leg	muscle
35	chr1:165603600-165606000	Weak transcription	Right Atrium	heart
36	chr1:165603600-165606200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr1:165603600-165606200	Weak transcription	Hela-S3	cervix
38	chr1:165603600-165606400	Weak transcription	Pancreas	Pancrea
39	chr1:165603600-165606600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr1:165603600-165607000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr1:165603600-165607000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:165603600-165607400	Weak transcription	Lung	lung
43	chr1:165603600-165608200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:165603600-165608400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:165603600-165608400	Weak transcription	NHEK	skin
46	chr1:165603600-165611400	Weak transcription	Esophagus	oesophagus
47	chr1:165603600-165614600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:165603600-165614800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr1:165603600-165614800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr1:165603600-165617400	Weak transcription	Rectal Smooth Muscle	rectum

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