Variant report

Variant	rs6674205
Chromosome Location	chr1:165608031-165608032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165600467..165604202-chr1:165606013..165610039,4	K562	blood:
2	chr1:165607099..165608797-chr1:165623169..165624684,2	K562	blood:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

rs_ID	r²[population]
rs10800120	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4147600	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9333387	0.82[AMR][1000 genomes]
rs9333392	0.83[AMR][1000 genomes]

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165601600-165608400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:165601600-165615200	Weak transcription	Spleen	Spleen
3	chr1:165601800-165615200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:165602000-165622800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:165602200-165624200	Weak transcription	Dnd41	blood
6	chr1:165602400-165614400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:165602400-165614800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:165602400-165615000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:165602600-165610400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:165602600-165615000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr1:165603000-165614800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:165603000-165619800	Weak transcription	HSMMtube	muscle
13	chr1:165603600-165608200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:165603600-165608400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:165603600-165608400	Weak transcription	NHEK	skin
16	chr1:165603600-165611400	Weak transcription	Esophagus	oesophagus
17	chr1:165603600-165614600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:165603600-165614800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:165603600-165614800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:165603600-165617400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:165603800-165624200	Weak transcription	Brain Germinal Matrix	brain
22	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
23	chr1:165604000-165608200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:165604000-165614400	Weak transcription	K562	blood
25	chr1:165604000-165616000	Weak transcription	Gastric	stomach
26	chr1:165604200-165610400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:165604400-165610000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr1:165604400-165614800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr1:165604600-165620000	Weak transcription	Fetal Brain Female	brain
31	chr1:165604800-165610200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:165604800-165623000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:165604800-165628400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:165605000-165620200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:165605200-165620000	Weak transcription	Primary T cells from cord blood	blood
37	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:165605400-165610200	Enhancers	Ovary	ovary
39	chr1:165605400-165620200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:165605600-165614000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr1:165605600-165614600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr1:165605600-165618000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr1:165605600-165622600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr1:165606000-165608600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr1:165606000-165609400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr1:165606200-165617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:165606400-165612000	Enhancers	Stomach Mucosa	stomach
49	chr1:165606400-165613400	Weak transcription	HMEC	breast
50	chr1:165606400-165613400	Weak transcription	HSMM	muscle

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