Variant report
| Variant | rs2350803 |
|---|---|
| Chromosome Location | chr2:50132801-50132802 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1013597 | 0.82[ASN][1000 genomes] |
| rs10495987 | 0.88[EUR][1000 genomes] |
| rs11125278 | 0.81[ASN][1000 genomes] |
| rs11885824 | 0.85[ASN][1000 genomes] |
| rs11902804 | 0.81[ASN][1000 genomes] |
| rs12465974 | 0.92[EUR][1000 genomes] |
| rs12617277 | 0.85[ASN][1000 genomes] |
| rs13007882 | 0.85[ASN][1000 genomes] |
| rs13016321 | 0.81[ASN][1000 genomes] |
| rs13016900 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13022108 | 0.82[ASN][1000 genomes] |
| rs17039448 | 0.81[ASN][1000 genomes] |
| rs17039456 | 0.82[ASN][1000 genomes] |
| rs17039472 | 0.82[ASN][1000 genomes] |
| rs17039484 | 0.85[ASN][1000 genomes] |
| rs17039508 | 0.80[ASN][1000 genomes] |
| rs2241750 | 0.85[ASN][1000 genomes] |
| rs2241752 | 0.82[ASN][1000 genomes] |
| rs35373906 | 0.82[ASN][1000 genomes] |
| rs4143112 | 0.85[ASN][1000 genomes] |
| rs57936567 | 0.84[ASN][1000 genomes] |
| rs59672611 | 0.80[ASN][1000 genomes] |
| rs60884569 | 0.84[ASN][1000 genomes] |
| rs62132409 | 0.84[ASN][1000 genomes] |
| rs62132414 | 0.82[ASN][1000 genomes] |
| rs6545136 | 0.89[EUR][1000 genomes] |
| rs6758043 | 0.85[ASN][1000 genomes] |
| rs6758276 | 0.85[ASN][1000 genomes] |
| rs7598993 | 0.82[ASN][1000 genomes] |
| rs920033 | 0.84[ASN][1000 genomes] |
| rs920034 | 0.85[ASN][1000 genomes] |
| rs920035 | 0.85[ASN][1000 genomes] |
| rs971732 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388948 | chr2:50092667-50602681 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv3399511 | chr2:50092687-50602651 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:50131000-50137000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr2:50132200-50134800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
