Variant report

Variant	rs13016900
Chromosome Location	chr2:50132479-50132480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1013597	0.81[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10495987	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10495988	0.81[JPT][hapmap]
rs11125278	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11885824	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11902804	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12465974	0.92[EUR][1000 genomes]
rs12617277	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12618646	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12998798	0.87[JPT][hapmap]
rs13007882	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs13016321	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs13022108	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1345562	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs17039448	0.90[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17039452	0.87[JPT][hapmap]
rs17039454	0.87[JPT][hapmap]
rs17039456	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs17039472	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs17039484	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs17039508	0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs17439140	0.90[JPT][hapmap]
rs17491776	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2193868	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2241750	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2241752	0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2350803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35373906	0.82[ASN][1000 genomes]
rs4143112	0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs57936567	0.84[ASN][1000 genomes]
rs59672611	0.80[ASN][1000 genomes]
rs60884569	0.84[ASN][1000 genomes]
rs62132409	0.84[ASN][1000 genomes]
rs62132414	0.82[ASN][1000 genomes]
rs6545136	0.89[EUR][1000 genomes]
rs6745765	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs6753652	0.82[JPT][hapmap]
rs6758043	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6758276	0.85[ASN][1000 genomes]
rs7598993	0.81[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs920033	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs920034	0.85[ASN][1000 genomes]
rs920035	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs971732	0.93[EUR][1000 genomes]
rs983094	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50131000-50137000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:50132200-50134800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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