Variant report

Variant	rs2351155
Chromosome Location	chr2:50307245-50307246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10176034	0.95[ASN][1000 genomes]
rs10203599	0.83[ASN][1000 genomes]
rs10209998	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs10432670	0.83[ASN][1000 genomes]
rs10490239	0.93[CHD][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes]
rs10490242	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11892979	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12615968	0.84[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs12713086	0.85[ASN][1000 genomes]
rs13008902	1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[ASN][1000 genomes]
rs13010879	0.85[ASN][1000 genomes]
rs13016084	0.84[ASN][1000 genomes]
rs13028133	1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs13030305	0.95[ASN][1000 genomes]
rs13430861	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.95[ASN][1000 genomes]
rs1523357	0.85[ASN][1000 genomes]
rs1563018	0.89[CHB][hapmap]
rs17039291	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs1712886	0.89[CHB][hapmap]
rs2678224	0.94[CHB][hapmap]
rs2688890	0.94[CHB][hapmap];0.90[CHD][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs2688891	0.94[CHB][hapmap]
rs527673	0.89[CHB][hapmap]
rs593468	0.83[CHB][hapmap]
rs598426	0.89[CHB][hapmap]
rs598474	0.87[CHB][hapmap]
rs610969	0.88[CHB][hapmap]
rs613166	0.89[CHB][hapmap]
rs6545153	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs6714191	0.85[ASN][1000 genomes]
rs6755305	0.89[ASN][1000 genomes]
rs689174	0.89[CHB][hapmap]
rs7560239	0.83[CHB][hapmap]
rs7572610	0.94[CHB][hapmap]
rs7606758	1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[ASN][1000 genomes]
rs9309178	0.89[CHB][hapmap]
rs973364	0.89[CHB][hapmap];0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs974827	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs985131	0.85[ASN][1000 genomes]
rs985132	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs995624	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2755683	chr2:50307245-50345280	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2756107	chr2:50307245-50440043	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv948833	chr2:50307245-50459077	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2351155	FBXO11	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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