Variant report

Variant	rs2678224
Chromosome Location	chr2:50391920-50391921
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10176034	0.81[ASN][1000 genomes]
rs10203599	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10209998	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10432670	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10490239	0.82[CHB][hapmap];0.87[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10490242	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs11892979	0.93[CHB][hapmap];0.94[YRI][hapmap]
rs12615968	0.89[CHB][hapmap];0.84[YRI][hapmap]
rs12713086	0.91[ASN][1000 genomes]
rs13008902	0.94[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13010879	0.91[ASN][1000 genomes]
rs13016084	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13026006	0.84[CHB][hapmap];0.84[YRI][hapmap]
rs13028133	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13030305	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13430861	0.94[CHB][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs1523357	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1563018	0.94[CHB][hapmap];0.84[YRI][hapmap]
rs17039291	0.94[CHB][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs1712886	0.94[CHB][hapmap]
rs1715983	0.84[CHB][hapmap];0.84[YRI][hapmap]
rs1915224	0.84[CHB][hapmap]
rs2351155	0.94[CHB][hapmap]
rs2678222	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2678223	0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2688890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2688891	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap]
rs527673	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs593468	0.89[CHB][hapmap];0.85[YRI][hapmap]
rs598426	0.94[CHB][hapmap]
rs598474	0.94[CHB][hapmap];0.84[YRI][hapmap]
rs610969	0.94[CHB][hapmap]
rs613166	0.94[CHB][hapmap]
rs6545153	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6714191	0.91[ASN][1000 genomes]
rs6755305	0.86[ASN][1000 genomes]
rs689174	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs7560239	0.89[CHB][hapmap]
rs7572610	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap]
rs7606758	0.94[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9309178	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap];0.89[ASN][1000 genomes]
rs973364	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs974827	0.94[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs985131	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs985132	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs995624	0.94[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2756107	chr2:50307245-50440043	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948833	chr2:50307245-50459077	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1002344	chr2:50326207-50518933	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv535692	chr2:50326207-50518933	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50389400-50392800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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