Variant report

Variant	rs2355092
Chromosome Location	chr7:11834461-11834462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10225277	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10242204	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10279149	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10499402	0.85[EUR][1000 genomes]
rs12690745	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2355086	0.81[EUR][1000 genomes]
rs2355091	0.83[EUR][1000 genomes]
rs2355094	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34132407	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35445570	0.80[EUR][1000 genomes]
rs4719285	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4719286	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4721013	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6949236	0.88[ASN][1000 genomes]
rs6967913	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6968056	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6979018	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7782151	0.92[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11832400-11839600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:11834000-11834600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:11834400-11836600	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links