Variant report

Variant	rs6949236
Chromosome Location	chr7:11841341-11841342
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10242204	0.84[ASN][1000 genomes]
rs2355092	0.88[ASN][1000 genomes]
rs2355094	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2355098	0.92[EUR][1000 genomes]
rs2355099	0.80[EUR][1000 genomes]
rs6967913	0.91[ASN][1000 genomes]
rs6968056	0.91[ASN][1000 genomes]
rs6978159	0.95[EUR][1000 genomes]
rs6979018	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7456883	0.92[EUR][1000 genomes]
rs7782151	0.88[GIH][hapmap]
rs7798977	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11839800-11842000	Weak transcription	A549	lung
2	chr7:11840400-11842000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr7:11841200-11847200	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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