Variant report

Variant	rs2355339
Chromosome Location	chr3:50697106-50697107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1905516	1.00[AMR][1000 genomes]
rs201195	1.00[AMR][1000 genomes]
rs2249775	1.00[AMR][1000 genomes]
rs2609009	1.00[AMR][1000 genomes]
rs2675780	1.00[AMR][1000 genomes]
rs2675805	1.00[AMR][1000 genomes]
rs388195	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs414856	1.00[AMR][1000 genomes]
rs4234696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4688706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs608961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779405	1.00[AMR][1000 genomes]
rs6790086	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7371990	1.00[AMR][1000 genomes]
rs7629126	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650776	1.00[AMR][1000 genomes]
rs9851961	1.00[AMR][1000 genomes]
rs9854316	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013225	chr3:50440826-50700448	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv536566	chr3:50440826-50700448	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50670400-50699800	Weak transcription	Hela-S3	cervix
2	chr3:50685800-50703800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:50687000-50712000	Weak transcription	Right Atrium	heart
4	chr3:50687600-50697400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:50687600-50702400	Weak transcription	Spleen	Spleen
6	chr3:50688200-50702600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:50688800-50702600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:50690200-50702200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:50690400-50700200	Weak transcription	Left Ventricle	heart
10	chr3:50692800-50700600	Weak transcription	NHDF-Ad	bronchial
11	chr3:50696200-50700400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:50696200-50702400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:50696400-50702800	Weak transcription	HSMM	muscle
14	chr3:50696600-50697600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:50696600-50700200	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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